Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0245 ATGACGTCACGTTCAGGTCATGGTCACGGTGGTAGTAGCGGTGGAAGGACCCGTGTGGGGAAATACGAACTGGGTAGAACACTTGGTGAAGGAAATTTTGCAAAGGTGAAATTTGCGAGGCATGTTGAAACTGGTGAGAATGTTGCTATCAAAATTCTTGACAAGGAAAAAGTTCTCAAGCATAAAATGATTGGCCAGATAAAACGAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTTATACGTATGCATGAGGTGATGGCAAGCAAGACAAAGATATACATTGTATTGGAATTTGTGACTGGTGGCGAGTTGTTTGATAAAATTGCACGCAATGGGAGGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGAGACCTAAAGCCGGAGAACTTGTTGCTCGATGCTAGTGGATTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTCCGGGAAGATGGGCTGCTTCATACAACATGTGGTACACCAAATTATGTTGCCCCAGAGGTGATCCACAATAAAGGATATGATGGTGCAATAGCTGATCTCTGGTCATGTGGTGTTATTCTTTTCGTTTTAATGGCTGGCTATTTGCCCTTTGAAGAAAACAATCTTATGGCATTGTATAAAAAGATTTTCAAGGCTGAGTTCTCCTGTCCTCCATGGTTCTCTTCCAGTGCTAAGAAACTAATCAAAAGAATCCTTGATCCCAATCCTGCTACACGAATAACAATTGCCGAGGTCATTGAGAATGAATGGTTCAAGAAGGGATATAAGCCTCCTAGATTCGAGCAGGCTAATGTTAGTCTCGATGATATAAATTCTATTTTCAGTGAATCTATGGATTCACAAATTCTTGTGGTCGAGAGGCGCACAGACGGGCCTGTGGCACCTGTGACCATGAATGCGTTTGAGCTTATCTCTACATCTCAGGGCCTCAACCTAAGTAGTCTTTTCGAGAAGCAAATGGGACTTGTTAAACGGGAAACGAGATTTACATCCAAATGTTCAGCAAATGAGATAATTTCAAAAATTGAGGAAGCAGCAGGGCCTCTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACCGGTCGTAAAGGTCATCTTTCTGTGAACACTGAGATCTTTGAGGTGGCCCCTTCGCTTTACATGGTCGAGTTGCGTAAGTCTGATGGAGATACTCTGGAATTTCACAAGTTCTACAAGAATCTAGCTACTGGGCTGAAAGATATAGTTTGGAAAGCAGAACCTATTGATGAAGAAAAAGATGGTAGCAGTGCATCAAAATAA 1380 0.4101 MTSRSGHGHGGSSGGRTRVGKYELGRTLGEGNFAKVKFARHVETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMHEVMASKTKIYIVLEFVTGGELFDKIARNGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDASGLLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAIADLWSCGVILFVLMAGYLPFEENNLMALYKKIFKAEFSCPPWFSSSAKKLIKRILDPNPATRITIAEVIENEWFKKGYKPPRFEQANVSLDDINSIFSESMDSQILVVERRTDGPVAPVTMNAFELISTSQGLNLSSLFEKQMGLVKRETRFTSKCSANEIISKIEEAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVNTEIFEVAPSLYMVELRKSDGDTLEFHKFYKNLATGLKDIVWKAEPIDEEKDGSSASK* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0245 459 Gene3D Phosphorylase Kinase; domain 1 11 101 - -
Lan15g0245 459 Pfam NAF domain 321 381 IPR004041 GO:0007165
Lan15g0245 459 Gene3D Transferase(Phosphotransferase) domain 1 102 284 - -
Lan15g0245 459 CDD CIPK_C 325 440 - -
Lan15g0245 459 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Lan15g0245 459 MobiDBLite consensus disorder prediction 1 20 - -
Lan15g0245 459 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g0245 459 SUPERFAMILY Protein kinase-like (PK-like) 19 321 IPR011009 -
Lan15g0245 459 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g0245 459 PANTHER SERINE/THREONINE KINASE 16 449 - -
Lan15g0245 459 CDD STKc_SnRK3 21 276 - -
Lan15g0245 459 SMART serkin_6 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g0245 459 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Lan15g0245 459 Gene3D Kinase associated domain 1, KA1 319 444 - -
Lan15g0245 459 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 449 - -
Lan15g0245 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0245 Lan-Chr15 2742272 2748060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0245 5 452 CBL-interacting serine-threonine protein kinases AT1G01140 68.722 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lan15g0245 Pkinase 1.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0245 - - gmx:100788746 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1152 12 17857574 17860014 Lan15g0245 15 2742272 2748060 PCT
Lan1g1128 1 21321426 21322786 Lan15g0245 15 2742272 2748060 PCT
Lan1g0238 1 1718606 1720710 Lan15g0245 15 2742272 2748060 PCT