Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0242 ATGATTGAAGCCAAATTTGTCTCTCTTTGTCAATCATTCTCTACTACTTTTCACTTCTCTGGGACCAATCATCATCTTCATCACGTTCTTGCTCTTCCACACTTCTCTAAAGATTCCCCATTTTCTCAAAACACTGCATGTGCCCAAGGACCACTTTTTTGCGTCAAAGGACCCTCTCTCTTACCTTCAATTTTAGGGTTTTTTTACTTTATTTACCCTTATTTAGAGAACGGAGATACAATGAAGAAGTCTTTGGATCCTTCATCTTTGGGCTCTTCTAAGATTCGATCTATAATAAATATGCCTACAGAAGCTGGACGGGCTGCATGGGATGTTTTATCTGGATCTGATTCCTACCATACCTCATCTGATGCTAGCCTCTTTTCTAGCTCGTTACCTGTTCTTCCACATGGGAAATTGAACTTGAATGGCACCGAAAACAGTTATCAATCAGTTGATGACATCTCATCTGGCTTTAAAAAGCTCCATGAAGATGTTGAGGACAATGATTCACCTGAAGATGTTGATAGTCATGCAATTGGAACCATGCTTCCTGATGATGAGGTGGAACTTTTAGCTGGTATAATGGATGATTTTGACCTAAGTGGTTTGCCTTGTTCCCTTGAGGATTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGCATGGAGCTAGAAACTGATCCACAGGATAGTCTCAGTGTGGGTATGTCTAAGTTAAGCTTCTCTGATAGCACTGCTGGCACTGGTTTGCCCCTTTATTCTTTTCCTAATGGTGTGGGAGCTGTTGCTGGAGAACATCCGTTGGGAGAGCATCCTTCCCGAACATTGTTTATTCGAAATATTAACAGTAATGTGGAGGATTCTGAGCTGAAAGCTCTTTTTGAGCAATATGGCCATATTAGAACCCTCTATACTGCCTGTAAACATCGGGGGTTTGTAATGATATCATATTATGACATCCGTGCTGCTCGAACAGCCATGCGTGCATTACAGAACAAACCTCTCCGGCGCAGGAAACTTGACATTCACTTCTCAATACCAAAGGACAATCCATCAGACAAGGATATCAACCAAGGGACCTTGGTGGTTTTCAATTTGGATCCTTCTGTTTCAAATGAAGATCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAGTCGTTGAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTGGAACCTAGTCGTCCTGGAGGAGCTCGTCGAACTTTGATGCTCCAACTTAATCAAGAGCTTGATCAAGATGAATATCGGAGTTTCCTATATCAAGTGGGTTCTCCTATGGCAAACTCTCCACCAAGTAATTGGTTGCAGTTTAGCAGTCCTGTCGAGCAGAATTCAATACAAACTATGAATCATTCTCCTGGTTCAAGGATCATAAGCCCAACAACAGGCAATCATTTACCAGGATTAGCTTCAATTTTGCAACCTCAGGTATCAAACAATGTGAAGGGTGCAGCTATTGGCAAGGACTTGAGAACTAGTAGTCATGGAGAGAGCATATTTACGAGTATGAATTCAACACATGGTGCTTCTTTTCAGTCGCATTCACTTCCAGAGCCAAAGTTCAGACAACATTTTGGACCATTATCCTCTTTTGGTCAATCAACATCAAATGGATCGTCAATTGAAACCTTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAACACTCTACTCCGAGCATAACAAGCCTTCAGCTTGGCCAAGACCATCTGTGGGGCATCCATTTACATCGAATGGAAAGAGCCATGCCTTCCCATACTCAAGTCGGAATAATTCCTTTCTTGGTTCATCCCAGCATCTTAACCATCATCATGTTGGCTCTGCTCCATCAGGTTTGCCTTTTGAGAGACACTTTGGTTTCCATCCCGAGTCACCTGAAACTTCCTTCATGAATAATGTTGGTTATGGAGGCATGAGTCTGGGTCACAATGATGGAAATTACATGGTTAATGTGGCTGGGTCTGTTAACGCTGGCATTAATATACCAAGAAATATGCCTGATAATGGTTCACCGAACTTCAGGATGAGATCTTCTCCTAGGCTTAACCCTGTGTTTTTGGGTAGTGGTCCTTACCCAGGACTACTGCCTACCACTATGGATAATTTGACTGACCGTGCTCGTAGTAGACGGATAGAGAACAATGGAAGCCAATTTGATAGCAAGAAGCAATTTCAGCTTGACTTGGACAAGATTAAAAATGGTGAAGATACAAGGACCACGTTAATGATAAAGAATATCCCTAATAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAAGGGTACCTATGATTTTCTATATCTGCCAATTGACTTCAAGAACAAATGCAACGTGGGTTATGCATTTATCAACATGCTTTCACCTTTGCTTATTGTTCCATTCTATGAGACATTCAGTGGGAAGAGATGGGAGAAATTTAACAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATACAAGGAATGACTGCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCTATTCTCTTCCACGCAGAGGGTCCTGAAGCTGGTGATCAGATCATTCAAGAGCATCTTCCCTCCAACAATCTAAATGTTCATGCACATAGGCCAAGTGAGTTACATTCAAGTGATTTTCCGGGCACAACTCCGAATGATGGCCTTCCTATGAGCTTGGAGACATATTAA 2823 0.4187 MIEAKFVSLCQSFSTTFHFSGTNHHLHHVLALPHFSKDSPFSQNTACAQGPLFCVKGPSLLPSILGFFYFIYPYLENGDTMKKSLDPSSLGSSKIRSIINMPTEAGRAAWDVLSGSDSYHTSSDASLFSSSLPVLPHGKLNLNGTENSYQSVDDISSGFKKLHEDVEDNDSPEDVDSHAIGTMLPDDEVELLAGIMDDFDLSGLPCSLEDLEEYDLFGSGGGMELETDPQDSLSVGMSKLSFSDSTAGTGLPLYSFPNGVGAVAGEHPLGEHPSRTLFIRNINSNVEDSELKALFEQYGHIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRTLMLQLNQELDQDEYRSFLYQVGSPMANSPPSNWLQFSSPVEQNSIQTMNHSPGSRIISPTTGNHLPGLASILQPQVSNNVKGAAIGKDLRTSSHGESIFTSMNSTHGASFQSHSLPEPKFRQHFGPLSSFGQSTSNGSSIETLSGPQFLWGSPTLYSEHNKPSAWPRPSVGHPFTSNGKSHAFPYSSRNNSFLGSSQHLNHHHVGSAPSGLPFERHFGFHPESPETSFMNNVGYGGMSLGHNDGNYMVNVAGSVNAGINIPRNMPDNGSPNFRMRSSPRLNPVFLGSGPYPGLLPTTMDNLTDRARSRRIENNGSQFDSKKQFQLDLDKIKNGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLLIVPFYETFSGKRWEKFNSEKVASLAYARIQGMTALVSHFQNSSLMNEDKRCRPILFHAEGPEAGDQIIQEHLPSNNLNVHAHRPSELHSSDFPGTTPNDGLPMSLETY* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0242 940 CDD RRM1_MEI2_like 274 350 IPR034453 -
Lan15g0242 940 Gene3D - 359 456 IPR012677 -
Lan15g0242 940 PANTHER RNA RECOGNITION MOTIF-CONTAINING 88 931 - -
Lan15g0242 940 SMART rrm1_1 276 344 IPR000504 GO:0003723
Lan15g0242 940 SMART rrm1_1 361 429 IPR000504 GO:0003723
Lan15g0242 940 Gene3D - 266 358 IPR012677 -
Lan15g0242 940 SUPERFAMILY RNA-binding domain, RBD 272 435 IPR035979 GO:0003676
Lan15g0242 940 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 362 427 IPR000504 GO:0003723
Lan15g0242 940 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 341 IPR000504 GO:0003723
Lan15g0242 940 CDD RRM2_MEI2_like 359 429 - -
Lan15g0242 940 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 348 IPR000504 GO:0003723
Lan15g0242 940 CDD RRM3_MEI2_like 779 863 IPR034454 -
Lan15g0242 940 MobiDBLite consensus disorder prediction 916 940 - -
Lan15g0242 940 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 433 IPR000504 GO:0003723
Lan15g0242 940 Pfam RNA recognition motif 2 776 872 IPR007201 -
Lan15g0242 940 PANTHER PROTEIN MEI2-LIKE 2 88 931 - -
Lan15g0242 940 SUPERFAMILY RNA-binding domain, RBD 778 862 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0242 Lan-Chr15 2711317 2718293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0242 270 468 Eukaryotic Initiation Factors Gene Family AT1G71770 25.112 7.57e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0242 - - lang:109328336 1915.2