Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0241 ATGGGTCGATCAAGATTAACCTTGAAACACATAGCGAATGATGCACCCCGTAAATCAACTTTCAGGCAAAGAAAGGATGTACTTTTGAATAAAATGCAAGAACTTTCTAATTTGTGTAAAGGTGAAGCTTGTTTGATAATTTACGATACGGATGGTGGTGATCCTCAACCAGTGACATGGCCTGCAAAGCTTAAGACGGAGCACTCCCTCATTCGAAGGTACGAAAGTGAAAAGAATGAGGAACCTCCGATTATGTTCGGCATCCAAGACTATTTCAACAATAAGAAAGAGAAGGTTGAGGCTGATATTTCCAAAGTGAGAAAGGAAATCCTCAAGATTAAGTATCCAACTAGCCACCCATGTTTTAATAATCTCGGAGATGAGCAGATTAGGAATTTCATTGCTGTGTTGGATGCTAAGGGTAGAGCTTGTGGTGAAAGAATGAACATGTTGAGATTGCAGCAACAACTTAAAGTCAACTCGGCTCTAACGAGTAGTGATGCCTTAAACTCAAGTGAAGTCAATTTCATGCAGAACAATTTTCAAACCCATCTTATCCCTACTCCTTTGGAGCCATTTGATGATAGTAACCACATCGCCTCATCCCCGCTTAAGCATAATATGGATTCTCAACCCCAGATGCTTCACTTTGATCCAAATCCTTTGCACTTCGATTGTGCTACACAAGTCGGCTCTCCTAATCATGTTGGTGTTCCCCCGGATCTTACTATACACAGTGATCCTGCCATAGTTTCTACAAATCAACTTGATGAGGTGGATTGGGATAGTCTGATTGATGGGCTTATGGATTTTGGTACTCTACCTCATGAGTCTGTTTTATACGATGACTTTTTGGGGTATCAGAATGTGCAACAACAAGGAGCAGCTTTCAATACCTTGACACCACTGGTCGATGAACTTCAGATACCTGACTACAATAATATGGTTCAAGCCGATTTATTCAACCACATGAATCAAGACAAGTAA 987 0.4073 MGRSRLTLKHIANDAPRKSTFRQRKDVLLNKMQELSNLCKGEACLIIYDTDGGDPQPVTWPAKLKTEHSLIRRYESEKNEEPPIMFGIQDYFNNKKEKVEADISKVRKEILKIKYPTSHPCFNNLGDEQIRNFIAVLDAKGRACGERMNMLRLQQQLKVNSALTSSDALNSSEVNFMQNNFQTHLIPTPLEPFDDSNHIASSPLKHNMDSQPQMLHFDPNPLHFDCATQVGSPNHVGVPPDLTIHSDPAIVSTNQLDEVDWDSLIDGLMDFGTLPHESVLYDDFLGYQNVQQQGAAFNTLTPLVDELQIPDYNNMVQADLFNHMNQDK* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0241 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Lan15g0241 328 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan15g0241 328 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan15g0241 328 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan15g0241 328 PANTHER PROTEIN, PUTATIVE-RELATED 4 245 - -
Lan15g0241 328 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan15g0241 328 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Lan15g0241 328 Gene3D - 14 99 IPR036879 GO:0003677|GO:0046983
Lan15g0241 328 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lan15g0241 328 PANTHER MADS BOX PROTEIN 4 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0241 Lan-Chr15 2706591 2708236 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0241 3 109 Type I MADS-box Gene Family AT1G31630 30.841 1.88e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan15g0241 SRF-TF 5.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0241 - - lang:109327505 676.781