Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0233 ATGGGTCGATCAAGATTAACCTTGAAGCGCATAGCGAATGATGCATCCCGGAAAACAACGTTTAAGCAAAGAAGGGATGTACTTCTGAATAAAATGCAAGAACTTTCGAAGTTGTGTAATGCTGAAGAAGGTGAAGCTGCTAAAGCTTGTTTGATAGTTTACAACATTAACGGTGGTGATCCTCAACTAGTGACTTGGCCTGAAAACCTTAAGGCCGATCACTCCCTCATTCAAAAGTACGAGAATGAAAAGAATGAGGAACCTCCGGTTATGTTTGGCATCCAAGACTACTTCAAGAATAAGAAAGACAAGGTTGAAGCCGATATTTCCAAAGTGCGGAAAGAAATCCTCAAGATTCAGTATCCAACTAGCCACCCATGTTTAAATAGTCTCGGAGATGAGCAGATTAGGAATTTCATTGCCGTGTTGGATGCGAAGAGTAAAGCCTGCAATGAAAGAATGAACATGTTGAAATGGCAGCATCAAGTTGAGGTGATCAACTCAGCTCAAACGAGTAGTGCTGCCTTAAACTCAAGTCAAGTCAATTTCACACCAAACAATTTTCAAACCCAACTTATCCCGACTCCTATGAAGCCATTTGACGACGATAGTAACCACATTGCCTCGACCATGAAGCATGATATGGGTTCTCATTCCCAAGTTCTTCACATTGATCCAAATCCTATGCAGTTGATGGCAAACGATAACGGGGTGATCGATTCTGCTAATCAAATTGGCTTGCCCTTGGATCGTGCTATACAACTCGGCTCTCCTAACCCTGTAGGCGTTCCCGTCGATTGCACTGAACCAAGTAATCCTGCTATAGATTCTACAAATCAACTTGATGAGTTGGATTGGGGTAGTCTATTTGATGGGCTTATAGATGGTGATTTTGACATAGATTTTATGAATTTCTAA 918 0.415 MGRSRLTLKRIANDASRKTTFKQRRDVLLNKMQELSKLCNAEEGEAAKACLIVYNINGGDPQLVTWPENLKADHSLIQKYENEKNEEPPVMFGIQDYFKNKKDKVEADISKVRKEILKIQYPTSHPCLNSLGDEQIRNFIAVLDAKSKACNERMNMLKWQHQVEVINSAQTSSAALNSSQVNFTPNNFQTQLIPTPMKPFDDDSNHIASTMKHDMGSHSQVLHIDPNPMQLMANDNGVIDSANQIGLPLDRAIQLGSPNPVGVPVDCTEPSNPAIDSTNQLDELDWGSLFDGLIDGDFDIDFMNF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0233 305 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 42 IPR002100 GO:0003677|GO:0046983
Lan15g0233 305 SUPERFAMILY SRF-like 1 66 IPR036879 GO:0003677|GO:0046983
Lan15g0233 305 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan15g0233 305 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan15g0233 305 PANTHER PROTEIN, PUTATIVE-RELATED 4 260 - -
Lan15g0233 305 PANTHER MADS BOX PROTEIN 4 260 - -
Lan15g0233 305 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Lan15g0233 305 ProSiteProfiles MADS-box domain profile. 1 42 IPR002100 GO:0003677|GO:0046983
Lan15g0233 305 SMART madsneu2 1 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0233 Lan-Chr15 2611422 2612923 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0233 3 115 Type I MADS-box Gene Family AT1G31630 29.204 2.23e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan15g0233 SRF-TF 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0233 - - lang:109327505 379.022