Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0223 ATGCAGAGCCAAGTTGTGTGTAATGGGTGCAGGAACATTTTGCTTTATCCTAGAGGGGCAACCAATGTTCGCTGTGCATTATGCAACACAATTACATCTGTTCCTCCACCTGGAATGGAAATGTCACAACTTTACTGTGGAGGCTGCAGGACCTTGCTAATGTACGCACATGGAGCTACAAGTGTGAGATGTTCCTGTTGTCACACTGTAAACCTTGTACCAGCGTCTAATCAAGTCAGCCATATCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGGGCTCCCTCGGTCAAATGTGCACTTTGTCACTATATCACTAATGTCACTACGACCAATGGAAGGCTTCCGAATCCTGGCCAAAGAACTAATGGACCAACCAACCCAGGAACCGTATCTTCTACTCCAACATCCATGCCCCACTCTCAGAGCCAAACTGTTGTAGTAGAAAATCCTATGTCTGTTGATTCGAGTGGGAAACTGGTGAGCAATGTTGTCGTCGGTGTTACAACGGAAAAGAAATGA 531 0.4614 MQSQVVCNGCRNILLYPRGATNVRCALCNTITSVPPPGMEMSQLYCGGCRTLLMYAHGATSVRCSCCHTVNLVPASNQVSHIHCGNCRTTLMYPYGAPSVKCALCHYITNVTTTNGRLPNPGQRTNGPTNPGTVSSTPTSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTEKK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0223 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
Lan15g0223 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Lan15g0223 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Lan15g0223 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Lan15g0223 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Lan15g0223 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lan15g0223 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Lan15g0223 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
Lan15g0223 176 MobiDBLite consensus disorder prediction 116 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0223 Lan-Chr15 2463118 2468936 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lan15g0223 zf-LSD1 4.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0223 - - gmx:100776394 323.939