Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0206 ATGGCATTTCAGGATTTCGCGATCTTATCGGAACGTAGAAGGAATGAGAGGAAAGAAAAAGTAAGGAAGAGGGTTATCTTTGGTGTACTTTCATCCATTCTCCTTGTATGTGTCATAGGTGCTGCAACATTTGTTCTTGTCAACAAAACTGGCTCTGAAAACAATGTAAACAAAAAACCTACCACAACATCAAGTGAAGATGCAAAAGTTCAACATTATTTGAAGACTATAAAAACAATATGTACCTCAACTGAATACAAGACCAAATGTGAAGGACCCCTTAGTGAAGAGGTAGAGAAGGACCCAAAATTGGCACAACCAAAGGAACTTCTTAGGTTATCTATAAAACTTGCTGAGGATGAAATTAATAAGGCCTTTAACAAAACAACATCCATGAAATTTGAATCAGAAATGGATAAAGGAGCATATGAAGATTGCAAACAGCTTTTTGATGATGCTAGGGAAGAACTAGGGTTCTCTATATCTGAAGTAAGAAAAAATGATTTGAAGAAGCTTTCAACAAGAACACCTGAATTGAATAATTGGCTTAGTGCAGTTATATCTTATCACCAAACATGCATTGATGGGTTTTCTAATGAAGAATTGAAGAATGAACTCAAAAAGCTCTTTGAAGATCCACAAGAATTTGTTAGCAATTCCCTTGCAATTGTGAATGATATGTCTTCTTTTCTATCCACACTCCAACCAGGTGTAACTCGTCACTTGTTATCAGAGAAAATTGATGACTTTCCTTCTTGGATTGGTGATGCAGATCGAAGGATGTTGAAGGCAGCAGATGACAAACCTACACCTAATGTCACTGTGGCAAAAGATGGTTCCGGAAACTTCAAAACCATATCCGAGGCTTTGGCATCCGTGCCACAAACATATACGGGACGTTATGTGGTTTATGTCAAAGAAGGAATATATGATGAGAAAGTGATTGTGACAAAGAGAATGGAAAATCTAACCATTTATGGCGATGGATCACAAAAGAGTATCATTACTGGCAATAAAAATTATGCAGATGGAGTTAGACCTTTCCAAACTTCTAGCTTTGTGGTACTTGGAGATGGGTTCTTGGGAAAGGCAATGGGATTTAGAAACACTGCTGGCCCAGAAAAACATCAAGCAATAGCTGTTAGAGTGCAAGCAGATCGTACAATATTTGTGAATTGTCGTTTTGAGGGCTACCAATACACTTTATACGCCCAAACTCATAGACAATTCTACCGTAGTTGTGTCATTGCTGGCACAATAGATTTTATCTTCGGCGACGCAGCAGCGGTATTCCAAAATTGTATCATGCAGGTTAGGAAACCGACGGAGAATCAACAAAACACTGTCACTGCTCAAGGTAGATATCAAAAACAAGAAACAACTGGTTTTGTTCTACAAAAATGTCAGATTAAAGCTGATGACACATTGGTTCCGGAAAAAGATAAAATCAAGAGCTACCTTGGTAGGCCATGGAAGGAATACTCAAGAACCATTGTCATGGAATCAGAAATCGGGGACATAATTCACCCTGATGGATGGTTACCTTGGGCAGGAAATTTTGCACTAAACACATTGTATTATGCTGAGTTCAACAACACAGGACCTGGTGCTAACACCAATGCTAGGGTCAATTGGGTTGGTCGTAAAGTCATTAACAAGGAGGAAGCTTCCAAATTTACTGTAGGGTCTTTCTTGAATGGAACATGGATCAGTGGTAGAGGTGTCCCCGCTCAGTTGGGTTTGTACAATTAA 1752 0.3881 MAFQDFAILSERRRNERKEKVRKRVIFGVLSSILLVCVIGAATFVLVNKTGSENNVNKKPTTTSSEDAKVQHYLKTIKTICTSTEYKTKCEGPLSEEVEKDPKLAQPKELLRLSIKLAEDEINKAFNKTTSMKFESEMDKGAYEDCKQLFDDAREELGFSISEVRKNDLKKLSTRTPELNNWLSAVISYHQTCIDGFSNEELKNELKKLFEDPQEFVSNSLAIVNDMSSFLSTLQPGVTRHLLSEKIDDFPSWIGDADRRMLKAADDKPTPNVTVAKDGSGNFKTISEALASVPQTYTGRYVVYVKEGIYDEKVIVTKRMENLTIYGDGSQKSIITGNKNYADGVRPFQTSSFVVLGDGFLGKAMGFRNTAGPEKHQAIAVRVQADRTIFVNCRFEGYQYTLYAQTHRQFYRSCVIAGTIDFIFGDAAAVFQNCIMQVRKPTENQQNTVTAQGRYQKQETTGFVLQKCQIKADDTLVPEKDKIKSYLGRPWKEYSRTIVMESEIGDIIHPDGWLPWAGNFALNTLYYAEFNNTGPGANTNARVNWVGRKVINKEEASKFTVGSFLNGTWISGRGVPAQLGLYN* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0206 583 CDD PMEI-like_3 79 229 - -
Lan15g0206 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 228 IPR035513 -
Lan15g0206 583 PANTHER PECTINESTERASE 14 581 - -
Lan15g0206 583 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Lan15g0206 583 SUPERFAMILY Pectin lyase-like 270 571 IPR011050 -
Lan15g0206 583 PANTHER PECTINESTERASE 14 581 - -
Lan15g0206 583 Coils Coil 108 128 - -
Lan15g0206 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 75 226 IPR006501 GO:0004857
Lan15g0206 583 Pfam Pectinesterase 272 567 IPR000070 GO:0030599|GO:0042545
Lan15g0206 583 SMART PMEI_2 72 223 IPR006501 GO:0004857
Lan15g0206 583 Pfam Plant invertase/pectin methylesterase inhibitor 76 223 IPR006501 GO:0004857
Lan15g0206 583 Gene3D - 266 581 IPR012334 -
Lan15g0206 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 228 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0206 Lan-Chr15 2222143 2224651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0206 1 583 Carbohydrate Esterase AT2G26450 49.271 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0206 - - gmx:100784679 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0206 15 2222143 2224651 Lan14g0089 14 1205707 1208225 LSH
Lan15g0206 15 2222143 2224651 Lan3g0951 3 20792276 20794868 LSH
Lan12g0942 12 16304389 16306723 Lan15g0206 15 2222143 2224651 PCT
Lan15g0206 15 2222143 2224651 Lan12g0942 12 16304389 16306723 PCT