Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0200 ATGGGTAACAATGTTTGTAAGCTTTGTATCCCCATAAAACTTATAACAAATGTTAGAAAGCCTTCAAAACCCTCTACTAGTAGTAGTACTATTGCTCCATCATTCATAGATTTGTTTCAACAAAGCTTATTAGAGTTAAATAATGATACCCCTATTGCCCTAAATGGATCAATCCCAGTTTTTATCTGTCAAATTTGCTTTGAATCAAAGCCTCAAAGTGATGCCTTAAATATTGAGGGTTGCAACCATTTTTACTGCACCAATTGCACTCTTAAATACATAGTTTCAAAGCTCCAAGACAATGTATTGAACCTTATGTGCCCTGAGCAAGGGTGCATTGGAGTGTTGAATCCTCAATACTGCAAAACCTTTCTACCAAACAAAGTATCAGTGTGGTGGGAAAATGCCCTAAGTGAATCAGTGATTCCTGAGAATGTTAAGTTTTATTGTCCTTTCAATGATTGTTCAGCTTTGTTAATCAATAATGGTAACAAAGGAAAGGTTATTAGAGAATCAAAATGTTCACATTGTGAGAGAAACATTTGTGTTCAGTGTAAAGCTCCTTGGCATGCAAAATTGAGTTGTGAAAAGTTTCAAAGGATGAAGAATAAAGAAGATGATTTGATGGAGGATTTAGCTAAGAGAAGAAACTGGAGAAGGTGTCCAAATTGTAAACGTTATGTTGAGAGGAATGGTGGCTGCAATCACATGAGATGCAGGTGCCATCATAGTTTTTGTTACCACTGCGGTAAAAGCTACTCCCTCAATCTTCTCCATTCTTGTTAA 786 0.3613 MGNNVCKLCIPIKLITNVRKPSKPSTSSSTIAPSFIDLFQQSLLELNNDTPIALNGSIPVFICQICFESKPQSDALNIEGCNHFYCTNCTLKYIVSKLQDNVLNLMCPEQGCIGVLNPQYCKTFLPNKVSVWWENALSESVIPENVKFYCPFNDCSALLINNGNKGKVIRESKCSHCERNICVQCKAPWHAKLSCEKFQRMKNKEDDLMEDLAKRRNWRRCPNCKRYVERNGGCNHMRCRCHHSFCYHCGKSYSLNLLHSC* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0200 261 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 255 IPR031127 GO:0004842|GO:0016567
Lan15g0200 261 SUPERFAMILY RING/U-box 204 253 - -
Lan15g0200 261 SMART ibrneu5 131 195 IPR002867 -
Lan15g0200 261 SMART ibrneu5 196 261 IPR002867 -
Lan15g0200 261 SUPERFAMILY RING/U-box 60 143 - -
Lan15g0200 261 Gene3D - 192 261 - -
Lan15g0200 261 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 59 255 - -
Lan15g0200 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
Lan15g0200 261 SUPERFAMILY RING/U-box 147 200 - -
Lan15g0200 261 Pfam IBR domain, a half RING-finger domain 143 195 IPR002867 -
Lan15g0200 261 Pfam IBR domain, a half RING-finger domain 198 254 IPR002867 -
Lan15g0200 261 ProSiteProfiles TRIAD supradomain profile. 59 261 IPR044066 -
Lan15g0200 261 ProSiteProfiles Zinc finger RING-type profile. 63 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0200 Lan-Chr15 2159325 2161179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0200 55 250 C3H Transcription Factor Family AT2G19610 29.469 3.23e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0200 K11975 - rcu:8259039 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0200 15 2159325 2161179 Lan3g0957 3 20897658 20918548 LSH