Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0188 ATGTCTAGTTCATCGGAGTACTCTGAGTTTTCCGGCCAGAAGCCGGTGAAGTCGCCGGAGAAAACAAGTTTCTCTCATACTTGTAGTCTATTGAGTCAATACATGAAGGAAAAGGGTAGTTTTGGAGATCTTACCATTGAGATGACATGCAACAAAGAACAAATTGAGTCACCTGAGACATCTTGTCAATCTGCAACAACCATGAACTTGTTTCCTACCAAAGAAAATAACATAGCACCAAAGAACCTCACAGCTTTGGATTTGCTCTCTCCACAAGCTGCTTTTCGCCCGCATCTTCCGGCCGAAGAGATTCCAACCTTGACCAATTCTAGTGTAATTAAGCCAGTGAGCAAGGGATCTAAACCTGCACAGTTGACAATCTTTTATGCTGGACAAGTTATTGCATTCGATGATGTTCCGGCCGATAAAGCCAATGAGATAATGTCCTTTGCCAGCAAAGGAATCTCCCAAAGCCAGAACTATTCTGTTCAAACATACACTAGGAGCCAACCTTCATTCCCTCATAATTTAGTCAGAACTTCTGCTGATTCAATTGCTCCTAATGTGAATATCATCCCTAGTACTCGAGCCAATTCGATTCTTCAACACCCTCAACCATCATCTAGACCTGTTGTTTGTGATCTACCAATTGCTAGGAATGCTTCACTTCATAGGTTCTTGGAGAAGAGAAAGGATAGAATTGCTGCCAAAGCACCATATCAAGTAACAAATCACATTGAAGCTACTAATAAGCCAATTGAATCTAAGTCATGGCTTGGCTTGGGTGCAAAATCATCTCAATCCTATGAGCAACTATAG 819 0.4164 MSSSSEYSEFSGQKPVKSPEKTSFSHTCSLLSQYMKEKGSFGDLTIEMTCNKEQIESPETSCQSATTMNLFPTKENNIAPKNLTALDLLSPQAAFRPHLPAEEIPTLTNSSVIKPVSKGSKPAQLTIFYAGQVIAFDDVPADKANEIMSFASKGISQSQNYSVQTYTRSQPSFPHNLVRTSADSIAPNVNIIPSTRANSILQHPQPSSRPVVCDLPIARNASLHRFLEKRKDRIAAKAPYQVTNHIEATNKPIESKSWLGLGAKSSQSYEQL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0188 272 SMART tify_2 118 153 IPR010399 -
Lan15g0188 272 Pfam Jas motif 216 241 IPR018467 -
Lan15g0188 272 PANTHER PROTEIN TIFY 10A-LIKE 17 267 - -
Lan15g0188 272 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 267 IPR040390 -
Lan15g0188 272 ProSiteProfiles Tify domain profile. 118 153 IPR010399 -
Lan15g0188 272 Pfam tify domain 121 152 IPR010399 -
Lan15g0188 272 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0188 Lan-Chr15 2014348 2016921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0188 1 264 Tify Gene Family AT1G19180 41.697 7.42e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan15g0188 tify 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0188 K13464 - gmx:100801449 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0188 15 2014348 2016921 Lan14g0104 14 1376743 1379156 LSH
Lan12g0959 12 16446447 16448923 Lan15g0188 15 2014348 2016921 PCT
Lan1g1316 1 22866242 22868277 Lan15g0188 15 2014348 2016921 PCT
Lan1g0443 1 3572478 3574732 Lan15g0188 15 2014348 2016921 PCT
Lan15g0188 15 2014348 2016921 Lan12g0959 12 16446447 16448923 PCT
Lan15g0188 15 2014348 2016921 Lan1g1316 1 22866242 22868277 PCT
Lan15g0188 15 2014348 2016921 Lan1g0443 1 3572478 3574732 PCT