Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0179 ATGAAAACTATATGGAAGTACATATTTCCTGGTTGTTATAAGGGTGAGTATCCCTCTACTAGGCCCAAGAAAGTGGTGGCTACAAAACCAAACTCTTCTTATAGGCTATCTTTAACAGATTTGAGTTTTCCAAGCTTAACATTTTCAGAAGATCTATCCATTTCTCTAGCAGGGTCTAACCTGCATGTTTTTTCACTAGCTGAACTCAAAACTATCACACAACACTTTTCTTCAAGTAATTTTCTTGGAGAAGGAGGGTTTGGACCAGTACATAAAGGGTTCATTGATGATAAGCTTAGGCCTGGTCTTAAGGCTCAACCTGTGGCTGTTAAACTCTTGGACTTGGATGGCTCACAGGGTCATAAAGAGTGGTTGACTGAAGTAGTTTTTCTTGGGCAACTAAGGCATCCACACCTTGTAAAGCTTATAGGATATTGCTGTGAAGAAGAACATAGGCTTTTGGTATATGAATATTTACCAAGAGGGAGCTTGGAAAATCACTTATTCAGAAGATTCTCAGCATCATTACCTTGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAGGGTCTAGCCTTTCTTCATGAAGCAGAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCTAACATTTTGTTAGACTCAGATTACAATGCCAAACTCTCTGACTTTGGATTGGCTAAAGATGGTCCAGAAGGAGATGACACTCATGTTTCAACCAGAGTTATGGGTACACAAGGATATGCAGCACCAGAATATGTCATGACAGGTCACTTGACAGCAATGAGTGATGTGTATAGCTTTGGAGTAGTGTTGTTAGAGATCCTAACAGGTAGAAAATCAGTGGACAAAAATCGGCCTCAAAGGGAGCAGAACTTAGTTGAATGGGCAAGGCCAATGTTAAATGATTATAGGAAACTTAGTAGGATAATGGACCCTAGACTTGAAGGGCAATTCTCTGAGTTAGGGACTAAAAAAGCAGCAGCATTGGCTTATGAATGCCTTAGCCATAGACCAAGGAGTAGACCATCAATGAGCACAGTGGTTAAGACTCTAGAACCCCTTCAAGATTTTGATGATGTTCCAATTGGACCCTTTGTTTACACAGTTCCACCTGATAATAATGAAGCACTAAGGCACAAGGATGCAAAGGAACATCATGAAGTGCCTAATGAAAGAAGGACCGAAAATCATCATCATCACCATCATCATCATCGCCGAATTCACCATCATAACAATGGTGGCCATAGGCCTCATCCACTTAAATCGCCCAAGCCTCAATTGCAGTTGCAGAGTGACAATCATATAAAGCAAGGAAGAATAATTTAG 1332 0.4024 MKTIWKYIFPGCYKGEYPSTRPKKVVATKPNSSYRLSLTDLSFPSLTFSEDLSISLAGSNLHVFSLAELKTITQHFSSSNFLGEGGFGPVHKGFIDDKLRPGLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENHLFRRFSASLPWSTRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAMSDVYSFGVVLLEILTGRKSVDKNRPQREQNLVEWARPMLNDYRKLSRIMDPRLEGQFSELGTKKAAALAYECLSHRPRSRPSMSTVVKTLEPLQDFDDVPIGPFVYTVPPDNNEALRHKDAKEHHEVPNERRTENHHHHHHHHRRIHHHNNGGHRPHPLKSPKPQLQLQSDNHIKQGRII* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0179 443 MobiDBLite consensus disorder prediction 382 443 - -
Lan15g0179 443 Gene3D Transferase(Phosphotransferase) domain 1 159 362 - -
Lan15g0179 443 SUPERFAMILY Protein kinase-like (PK-like) 53 354 IPR011009 -
Lan15g0179 443 PANTHER OS01G0588500 PROTEIN-RELATED 20 409 - -
Lan15g0179 443 Gene3D Phosphorylase Kinase; domain 1 45 158 - -
Lan15g0179 443 MobiDBLite consensus disorder prediction 382 396 - -
Lan15g0179 443 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 20 409 - -
Lan15g0179 443 MobiDBLite consensus disorder prediction 397 419 - -
Lan15g0179 443 Pfam Protein tyrosine and serine/threonine kinase 80 353 IPR001245 GO:0004672|GO:0006468
Lan15g0179 443 ProSiteProfiles Protein kinase domain profile. 76 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g0179 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Lan15g0179 443 CDD STKc_IRAK 82 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0179 Lan-Chr15 1913069 1915500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0179 62 389 Glycoside Hydrolase AT3G07070 50.755 1.71e-103 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan15g0179 PK_Tyr_Ser-Thr 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0179 - - gmx:100797003 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0968 12 16501806 16504000 Lan15g0179 15 1913069 1915500 PCT
Lan1g1304 1 22750971 22774766 Lan15g0179 15 1913069 1915500 PCT
Lan1g0435 1 3488134 3490181 Lan15g0179 15 1913069 1915500 PCT
Lan15g0179 15 1913069 1915500 Lan12g0968 12 16501806 16504000 PCT
Lan15g0179 15 1913069 1915500 Lan1g1304 1 22750971 22774766 PCT
Lan15g0179 15 1913069 1915500 Lan1g0435 1 3488134 3490181 PCT