Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0170 ATGGCAACAACAACCCAACTGAGCAAGAAGAGAAAGTTCGTAGCTGATGGTGTTTTCTTCGCTGAATTGAACGAGGTTCTTACCAGAGAGCTTGCTGAAGATGGTTACTCTGGTGTTGAGGTTAGGGTTACACCTATGCGCACTGAGATCATTATCAGAGCCACTCGTACCCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATTAGGGAGCTGACCTCAGTGGTTCAGAAGAGGTTCAAGTTCGCAGAGAACACCGTGGAGCTTTATGCTGAGAAGGTTAACAACAGGGGTCTCTGTGCTATTGCCCAGGCTGAATCTCTTCGCTACAAGCTCCTTGGAGGTCTTGCTGTCCGTAGGGCCTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGTGCTAAGGGTTGTGAGGTCATCGTCAGTGGAAAATTGAGGGCCCAGAGAGCCAAATCCATGAAGTTCAAGGATGGATACATGATTTCTTCTGGGCAACCAGTTAAGGATTACATCGACTCTGCAGTGAGACACGTCCTTCTCAGACAGGGTGTTCTCGGTATCAAGGTTAAGATCATGCTTGACTACGATCCTAAAGGAAAGCAGGGTCCCAAAACTCCTCTCCCTGACATTGTCTTGATCCACACTCCAAAGGAGGAGGAAGAATACATTCGGCCCGCTCCTGCTGTTATTGCAAATGAAATTGAAGTCCCCGTGGTCGTGGCTTGA 723 0.4827 MATTTQLSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFAENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDYDPKGKQGPKTPLPDIVLIHTPKEEEEYIRPAPAVIANEIEVPVVVA* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0170 240 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 12 101 IPR009019 GO:0003723
Lan15g0170 240 TIGRFAM uS3_euk_arch: ribosomal protein uS3 10 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lan15g0170 240 CDD 40S_S3_KH 17 97 - -
Lan15g0170 240 Pfam Ribosomal protein S3, C-terminal domain 108 190 IPR001351 GO:0003735|GO:0006412
Lan15g0170 240 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 5 235 - -
Lan15g0170 240 SUPERFAMILY Ribosomal protein S3 C-terminal domain 95 193 IPR036419 -
Lan15g0170 240 Pfam KH domain 22 95 IPR004044 GO:0003723
Lan15g0170 240 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 5 235 - -
Lan15g0170 240 ProSitePatterns Ribosomal protein S3 signature. 149 185 IPR018280 -
Lan15g0170 240 ProSiteProfiles Type-2 KH domain profile. 23 94 IPR004044 GO:0003723
Lan15g0170 240 Gene3D - 95 233 IPR036419 -
Lan15g0170 240 Gene3D - 1 93 IPR015946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0170 Lan-Chr15 1835856 1838702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0170 5 228 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 88.839 3.45e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0170 K02985 - gmx:100499737 436.802