Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0169 ATGGCGGTGAATCTAACTCCGAACGCGATTCCGGCGATAATTGCCGGCGACGTTAACTCCAAGCCACTCGTTCAGGTTATGGATATAACACTAATCTCAAATCGGAACAATAACTCGCAGCAACAGAGATACCGTCTTTTAATATCCGACGCCGTTTCCACTCACCACGCTATGCTCGCTACTCAACTCAACGATCGAATCCTAACCGCTCAAGTTAAGAAGGGTTCCGTTCTTCAGCTTCTCGAATATATATGCACTCCTCTCCATAATCGCAAGATTATTGTTGTGCTCAACATGGAAACAATAATACCTGATTGTGAGATCATTGGGAATCCTAAGTCGTTTGTGGAATCTGATTTACCAACTCAGAGAGCATTACCTGATAAGACTGTGGAGGACTCTTCCAGGAGTAATAATAATAATAATCTACCTGTTAAAAAAACTAGTAATGATGTGCAGAATTTCCGGCCTACAGTTCAACCTGCATACCAACCACCCCCGGTCTACAAAAGCCATGGGGCAATTGTGAAAAATGAGGCACCAGCACGCATAGTTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAGGGCACGTGTAACTGCGAAAGGGGAACTGCGCCGCTATAATAATGCTCGTGGAGATGGAAAAGTCTTCTCGTTTGATCTCCTTGACTTTGATGGAGGTGAAATACGAGTAACCTGCTTTAATGCTGTTGTTGATCGCTTCTATGATGCAGTTGAGGTTGGCAAAGTTTATTTGATATCCAAAGGTAGCTTGAAACCCGCAAAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATATTTTTGGATACAACTTCAACTGTTGAGCTTTGCACAGATGAAGATGGTTCTATACCTAGACAGCAGTTCTCCTTCAGGCCTATCAGTGACATAGAAAATGTTGATAATGACTCCATTCTTGACATTATTGGGGTTGTTACATCTGTTAATCCTTCGTTTCCCATCTTGAGGAAGAACGGAATGGAAACTCAAAAAAGAACTTTGAATTTAAAGGATTCATCCGGCAAGAGTGTTGAGGTAACCCTTTGGGGTGAATTCTGCAACAGGGATGGACAAAAGCTGCAGGAGATGGTAGATTCTGGGTCTTTCCCAATTCTGGCGGTCAAAGCTGGGAAAGTTAGTGACTTCAGTGGAAAGTCGATAGGGACTATTTCTGCTACACAGCTTTTCATAAATCCAGATTTCCCCGAATCTCACAGCTTAAGGGAGTGGTTTGATCAAGTGGGAAAAGATTCTGCTTCTCTATCCATTTCCAAGGACATTATCCTTGGAGGTCCAAAAAATGAGATACGTAAAACTGTATCTCAGATCAAGGATGAAGGTTTGGGGCGGTCAAGTAAGCCAGACTTTATAACAGTGAGGGGAACCTTATCATTTATCAAGACAGACACATTTTGTTACACAGCTTGCCCTTTGATGATCGGAGATCGACAGTGCAACAAGAAAGTGACTAGCTCAGGAAACACAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTTCAAGCTCAAATTCTGGATCATACAGGAATAACGTGGGTAACTGCTTTTCAGGAGTCAGGGGAAGAGATTGTGGGGTACCCAGCAAAGGAGCTGTACTTGTTGAAGTATGAACAGCAGGATGATGAGAGATTTGGAGAAATAATCAAGAGTAGTCTCTTCAAGCAGTTTGTGTTTAGGCTGAAAATCAAAGAGGAATTGTATGGCGATGAGCAGAGGGTGAAGATTACAGTAGTCAAGGCTGATAAGGTGAATTATTCTTCAGAGAGTAGATACTTGCTTGATTTGATTTCCAAGATTTGTAAGCAGTAA 1893 0.4221 MAVNLTPNAIPAIIAGDVNSKPLVQVMDITLISNRNNNSQQQRYRLLISDAVSTHHAMLATQLNDRILTAQVKKGSVLQLLEYICTPLHNRKIIVVLNMETIIPDCEIIGNPKSFVESDLPTQRALPDKTVEDSSRSNNNNNLPVKKTSNDVQNFRPTVQPAYQPPPVYKSHGAIVKNEAPARIVPIAALNPYQGRWAIRARVTAKGELRRYNNARGDGKVFSFDLLDFDGGEIRVTCFNAVVDRFYDAVEVGKVYLISKGSLKPAKKNFNHLKNEWEIFLDTTSTVELCTDEDGSIPRQQFSFRPISDIENVDNDSILDIIGVVTSVNPSFPILRKNGMETQKRTLNLKDSSGKSVEVTLWGEFCNRDGQKLQEMVDSGSFPILAVKAGKVSDFSGKSIGTISATQLFINPDFPESHSLREWFDQVGKDSASLSISKDIILGGPKNEIRKTVSQIKDEGLGRSSKPDFITVRGTLSFIKTDTFCYTACPLMIGDRQCNKKVTSSGNTRWQCDRCNQEFEECDYRYLLQAQILDHTGITWVTAFQESGEEIVGYPAKELYLLKYEQQDDERFGEIIKSSLFKQFVFRLKIKEELYGDEQRVKITVVKADKVNYSSESRYLLDLISKICKQ* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0169 630 CDD RPA1_DBD_B 318 425 - -
Lan15g0169 630 SUPERFAMILY Nucleic acid-binding proteins 450 627 IPR012340 -
Lan15g0169 630 CDD RPA1_DBD_C 453 626 IPR013955 -
Lan15g0169 630 Gene3D - 440 627 IPR012340 -
Lan15g0169 630 Gene3D - 3 116 IPR012340 -
Lan15g0169 630 Pfam OB-fold nucleic acid binding domain 199 279 IPR004365 GO:0003676
Lan15g0169 630 Pfam Replication protein A OB domain 307 411 IPR031657 -
Lan15g0169 630 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 626 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lan15g0169 630 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lan15g0169 630 PANTHER REPLICATION FACTOR A 1, RFA1 2 624 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lan15g0169 630 SUPERFAMILY Nucleic acid-binding proteins 301 428 IPR012340 -
Lan15g0169 630 Gene3D - 182 293 IPR012340 -
Lan15g0169 630 MobiDBLite consensus disorder prediction 132 149 - -
Lan15g0169 630 Pfam Replication factor-A C terminal domain 469 620 IPR013955 -
Lan15g0169 630 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Lan15g0169 630 CDD RPA1N 9 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lan15g0169 630 CDD RPA1_DBD_A 186 289 - -
Lan15g0169 630 MobiDBLite consensus disorder prediction 127 149 - -
Lan15g0169 630 Gene3D - 296 434 IPR012340 -
Lan15g0169 630 SUPERFAMILY Nucleic acid-binding proteins 183 296 IPR012340 -
Lan15g0169 630 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0169 Lan-Chr15 1831382 1834537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0169 26 626 Core DNA Replication Machinery Family AT2G06510 68.506 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0169 K07466 - gmx:100792409 1024.23