Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0167 ATGGGTGATGTTGTAAGTCCAATTATAGTTTCATCTTCTCCTAAACCCTCTCCCTCATCAACCATCTATACCATACCCTTCTTGTACTATGGCCTAGTGGTGGTTGGAACTGCAGCCATGGTGCTAGCCATATACAATTTCATCATCACCAAATGTTGCAACAACAGGGTCCAAACTCAGCCATCACAACCTTCAGGGCATAGCCGAAGTTTGGTTGATTTAGTGGTCAATGAAAGTAGGAACTTTAACAACAACAATTCACAAAAAAGGAACCTTTTTTCAATCTCTAGCTTCAAGTACAAGAAAGAAGTGGTTTTGACAAATGAAGGAGGAAAAGAGAAACAACAACAACAACAACAACAACAACAAGGTGGGGTTGATGATTATGAGTGTCCAGTATGTCTATCATTTTATGAAGAAGGGGATGAAGTGAAGAACTTACCACTTTGCAAGCACTCTTTTCATGCTATTTGCATAGATATGTGGCTTTACTCTCACTTTGATTGCCCAATTTGTAGAACACCTGTTAGTCCTTTCTTTCATCATCCTTTTCCAGCACAGAATTCTCATCATAGGTTTGATGCCACCTATGTTTGA 597 0.3936 MGDVVSPIIVSSSPKPSPSSTIYTIPFLYYGLVVVGTAAMVLAIYNFIITKCCNNRVQTQPSQPSGHSRSLVDLVVNESRNFNNNNSQKRNLFSISSFKYKKEVVLTNEGGKEKQQQQQQQQQGGVDDYECPVCLSFYEEGDEVKNLPLCKHSFHAICIDMWLYSHFDCPICRTPVSPFFHHPFPAQNSHHRFDATYV* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0167 198 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 185 IPR044675 -
Lan15g0167 198 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 12 185 - -
Lan15g0167 198 SMART ring_2 131 172 IPR001841 -
Lan15g0167 198 CDD RING-H2_EL5_like 130 173 - -
Lan15g0167 198 SUPERFAMILY RING/U-box 121 180 - -
Lan15g0167 198 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Lan15g0167 198 Pfam Ring finger domain 130 173 IPR001841 -
Lan15g0167 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 178 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0167 Lan-Chr15 1828032 1829200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0167 16 177 C3H Transcription Factor Family AT1G04360 30.247 8.51e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0167 - - aprc:113852327 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1292 1 22659107 22659984 Lan15g0167 15 1828032 1829200 PCT
Lan15g0167 15 1828032 1829200 Lan1g1292 1 22659107 22659984 PCT