Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0164 ATGGACGGTGGCGCGTACAACCCTCGATCGGTGGAAGCGGTTTTCCGGGACTTTAAGGGCCGCAGAGCCGCCATTGTTAAAGCCCTTACTACTGATGTGGTTGAATTTTATCAGCAGTGTGATCCTGAAAAGGAGAATCTTTGTCTGTATGGGTTCCCCAGTGAAAAATGGGAAGTTAATTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCCAGGGATGGGATGCAAGAAAAGGACTGGCTTTCATTGGTTGCTGTTCACAGCGATGCATGGCTCCTTTCAGTGGCCTTCTACTTTGGGGCAAGATTTGGTTTTGACAGTAGTGACAGGAAACGCCTGTTCACTATGATTAATGATCTGCCAACAATATTTGAGGTTGTGACTGGAGCTGCAAAGAAACAGTCAAAGGAAAAGTCATCAGTTTCAAACCACACCAGCAACAAATCAAAGTCCGGCTCTAAAGGGAGAGGATCCGAGTCAAGGAAGTATTCAAAGCAAGCAAATGATGAGGACGAGGAGGAGGAATTGGAATTGGACGATGACGATGATGAGCATTGTGGTGCATGTGGGGAGAATTATACATCTGAATCTGTTGAATTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGTAAATGTGTGAAGATCACTCCTGCCCGGGCTGACCACATCAAGCAGTATAAGTGCCCCTTATGCACCAGCAATAAGAGAGCGCGTCCTTGA 756 0.4643 MDGGAYNPRSVEAVFRDFKGRRAAIVKALTTDVVEFYQQCDPEKENLCLYGFPSEKWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDSSDRKRLFTMINDLPTIFEVVTGAAKKQSKEKSSVSNHTSNKSKSGSKGRGSESRKYSKQANDEDEEEELELDDDDDEHCGACGENYTSESVEFWICCDICEKWFHGKCVKITPARADHIKQYKCPLCTSNKRARP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0164 251 ProSiteProfiles Zinc finger PHD-type profile. 192 246 IPR019787 -
Lan15g0164 251 SUPERFAMILY FYVE/PHD zinc finger 184 246 IPR011011 -
Lan15g0164 251 PANTHER CPG BINDING PROTEIN 4 251 IPR045104 GO:0006355|GO:0042393
Lan15g0164 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 251 - -
Lan15g0164 251 SMART PHD_3 194 244 IPR001965 -
Lan15g0164 251 MobiDBLite consensus disorder prediction 144 190 - -
Lan15g0164 251 ProSitePatterns Zinc finger PHD-type signature. 195 243 IPR019786 -
Lan15g0164 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 250 IPR013083 -
Lan15g0164 251 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Lan15g0164 251 CDD PHD_AL_plant 195 246 IPR044104 -
Lan15g0164 251 Pfam PHD-finger 195 245 IPR019787 -
Lan15g0164 251 MobiDBLite consensus disorder prediction 163 178 - -
Lan15g0164 251 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0164 Lan-Chr15 1810537 1815941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0164 1 250 Alfin-like Transcription Factor Family AT3G42790 72.047 4.19e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan15g0164 Alfin 1.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0164 - - gmx:100500110 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0164 15 1810537 1815941 Lan14g0124 14 1540809 1545012 LSH