Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0160 ATGAAGGGAATATTTCCTACTGTTGCAGTTCCATTTTCAGTTGGAAATTTAATCCAAAAGGATATAACTGGTCTAGAGATTGTGACAAATACAATAGAAGCTTTTATATTAAATCCTGAAACTGAAAACCACACAGATATTATTAGTCCACAATGCCAAAATACAGTATCTGAAGAGGTCAATGTAGCTGACCTTGTCTCAGAAATGGTTATAAAGGAATCTGCTACTTTGAGGACTAATTGTGATGAAATAGTTTCGCCGATTGGCGTCGAGGGTGACGATAATATCCATGGAAGTGGATCAGATGGATGTGATCCAAAACTAACTGTTGAGCCTCCAGAGAAGCTACCTTGCAGAACAAGCTACCAGAATGCGCCGGAATTGAGTGGTGATTACCCTCTTTATGGTTTCTTATCAGTTTGTGGAAGAAGACAGGAAATGGAAGATGCTATTGCTGTTAAGCCTCAACTTTTTCAAGTACCTTCACATATGCTAATGGATGATTATGTCAATGGAAATACAAAATATTCTCCGGCCCATTTTTTCGGCGTCTATGATGGACATGGAGGCTTTGAGGTTGCTAATTACTGTCAGGAACATCTTCATTCAGTGTTGATTAAGGAAATAGAAGTTGTAGAAGCAATGTTGGCTGAAAAGAATGAGAGAAACAATTGGCAGGACCATTGGAAAAAAGCATTCTCCAATTGTTTTCATAAAGTAGATGATGAGGCTAATAGTGGAAGCAACAATGGTAATGAATCTGAATGTAGTATTGAATCTCTTGCTACTGAGACTGTTGGCTCTACTGCAGTGGTTGCTGTTTTAACTCAAAGCTACATAATCGTTGCGAACTGCGGCGATTCGAGAGCCGTTATGTGTCGCGGAAAAGAAGCACTGCCATTGTCTGCTGACCACAAACCAGATAGAGAGGATGAGTGGACAAGGATAGAAGCTTCAGGAGGAAAGGTCATACAGTGGAATGGATACAGAATTCTTGGTGTTTTGGCAGTGTCAAGGTCAATAGGTGATAGATACTTGAAACCATGGATAATTCCAGAACCAGACATCATGTTTGTCCATCGTAAAAAAAACGACGAGTGCCTTATTCTAGCAAGTGATGGTTTATGGGATATGATGACAAATGAAGAAGCCTGTGACATTGCGCGAAAGCGAATCTTAATTTGGCACAAGAAGAATGGTAACAATGTTTCAATGGGACAAGGCCATGGAGTTGATCTTGCATCTCAGTATGCTGCAGAGTATCTATCTAGAGTTGCACTCCAAAGGGGAAGCAAAGATAATATCTCTGTCATTGTCATAGACTTGAAGGCTCAAAGAAAATTTAAGACAAAAGCTGAAAGTTGA 1365 0.3971 MKGIFPTVAVPFSVGNLIQKDITGLEIVTNTIEAFILNPETENHTDIISPQCQNTVSEEVNVADLVSEMVIKESATLRTNCDEIVSPIGVEGDDNIHGSGSDGCDPKLTVEPPEKLPCRTSYQNAPELSGDYPLYGFLSVCGRRQEMEDAIAVKPQLFQVPSHMLMDDYVNGNTKYSPAHFFGVYDGHGGFEVANYCQEHLHSVLIKEIEVVEAMLAEKNERNNWQDHWKKAFSNCFHKVDDEANSGSNNGNESECSIESLATETVGSTAVVAVLTQSYIIVANCGDSRAVMCRGKEALPLSADHKPDREDEWTRIEASGGKVIQWNGYRILGVLAVSRSIGDRYLKPWIIPEPDIMFVHRKKNDECLILASDGLWDMMTNEEACDIARKRILIWHKKNGNNVSMGQGHGVDLASQYAAEYLSRVALQRGSKDNISVIVIDLKAQRKFKTKAES* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0160 454 Gene3D - 128 452 IPR036457 -
Lan15g0160 454 SUPERFAMILY PP2C-like 132 443 IPR036457 -
Lan15g0160 454 SMART PP2C_4 124 440 IPR001932 -
Lan15g0160 454 Pfam Protein phosphatase 2C 136 435 IPR001932 -
Lan15g0160 454 ProSitePatterns PPM-type phosphatase domain signature. 181 189 IPR000222 GO:0043169
Lan15g0160 454 ProSiteProfiles PPM-type phosphatase domain profile. 134 442 IPR001932 -
Lan15g0160 454 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 95 451 - -
Lan15g0160 454 PANTHER ALPHABET, ISOFORM E-RELATED 95 451 - -
Lan15g0160 454 CDD PP2Cc 135 442 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0160 Lan-Chr15 1775698 1777913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0160 133 452 PP2C-type Phosphatase Gene Family AT1G17550 56.923 3.37e-135 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0160 K14497 - gmx:100812974 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0160 15 1775698 1777913 Lan14g0129 14 1599237 1602080 LSH
Lan12g0994 12 16656029 16659184 Lan15g0160 15 1775698 1777913 PCT
Lan1g1281 1 22588481 22591453 Lan15g0160 15 1775698 1777913 PCT
Lan15g0160 15 1775698 1777913 Lan12g0994 12 16656029 16659184 PCT
Lan15g0160 15 1775698 1777913 Lan1g1281 1 22588481 22591453 PCT