Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0149 ATGGAAATGGAAGGTTTTGGTGAAAACAGTAATAAGTCACAGTTTGCGGTGAAAACGTTTGAGATAGTGGAGAACCCAGAAACCAATGCAATTGTATCATGGAATGAAACGCGGGATAGCTTTGTCGTTTGGAATGTTCAATCATTCACTCAAAACATTCTTCCCAACTATTTCAAGCATAGCAACTTTTCAAGCTTCATTCGCCAGCTTCATTTCTATGGTTTTAGGAAAGTTGATTCAGGGCGTTGTGAATTTGCAAATGAAGGATTTAAGGGAGGGATGAAGCATTTGCTGAAGAACATAACATGTAAACGCCCCAAGTTTAAGAAACTGCATCAAGGGTCTTCCAATCTAATGGATCCTAATCTGAAGGATGAAGTTGAGCAGCTGAAGAAAGATAATGCCTTTTTGAAAGTGGAAATTGTGAAGCTGAGACAGAAGAATCAGAATTTAGATAATCAAGTCAGTAGTTTTAAGGAGCGAATTCGTCGCGCCGAGTTGAATCGTAATCAGATGACACATTTCATTGCTAGAATGGATAAAATGAAGAAATTGGTTGCTATGTTGCACCAGAATGGACAGGAAAAAGAGCAGCATGACAAGGTTGGAACACAGTACCAGAATGTTGAACATAAACATGGTATTGAACAATTGTTTTCATTGCAATCTGAGTTCATTGAAGTAATGTCTGGGATTTTGAAAACTAACAAGGTTGTAAACCAAGCTGCTTCTCCCATTGGTTCTACTTGTAGTGAAAGTTTGCATGATGAGTCCTTTGATTTTGAGGGTATGTTGAAAAAACTACTAGGAGAGAGTTGTGCTGATGAAAAAGTAGATGCAAATCACTCATGTATAGATATTGAATTAGAGTTATTCTTGGGTAAGTCTACAGATTGGACCGGATTCGGCGGCGAAATTGGTAAGGGAAACTAG 933 0.3826 MEMEGFGENSNKSQFAVKTFEIVENPETNAIVSWNETRDSFVVWNVQSFTQNILPNYFKHSNFSSFIRQLHFYGFRKVDSGRCEFANEGFKGGMKHLLKNITCKRPKFKKLHQGSSNLMDPNLKDEVEQLKKDNAFLKVEIVKLRQKNQNLDNQVSSFKERIRRAELNRNQMTHFIARMDKMKKLVAMLHQNGQEKEQHDKVGTQYQNVEHKHGIEQLFSLQSEFIEVMSGILKTNKVVNQAASPIGSTCSESLHDESFDFEGMLKKLLGESCADEKVDANHSCIDIELELFLGKSTDWTGFGGEIGKGN* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0149 310 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan15g0149 310 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 274 IPR027725 -
Lan15g0149 310 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan15g0149 310 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan15g0149 310 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan15g0149 310 Gene3D - 7 105 IPR036388 -
Lan15g0149 310 Pfam HSF-type DNA-binding 15 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan15g0149 310 Coils Coil 127 168 - -
Lan15g0149 310 SUPERFAMILY "Winged helix" DNA-binding domain 11 102 IPR036390 -
Lan15g0149 310 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 3 274 - -
Lan15g0149 310 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0149 Lan-Chr15 1686085 1688952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0149 3 178 HSF AT2G26150 45.604 8.84e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan15g0149 HSF_DNA-bind 1.3e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0149 K09419 - gmx:100818430 236.113