Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0145 ATGCACCCTATGGAAGGTGTCTTCTCCCTCCCTGAAGCCGCCAGAACTGACTTTCTCCATTCTCTAGTTCAATATTTGGGCTGCACTTACATTTGTCTATGGTCATCTGATCCTATTTCAAACAATCGTTTGATTTTCTTGGATGGTTTCTACAACCAACCAAGCACTTCTTTGGGGAGTGTAGCTCAAGAGCTTTTCAACCATTACCAGAGTTTAACATTTGATATCAATAATGACTGTGTTCCTGGATTAGCTTTTAAGAACCAACGCCCTTATCTATTGCTGCAACAATTGGATCTTCTGAGATTAGCATCCACAGAAATCCAAACACAATTCTTTCAGGAAGCAAGGATTAAGACTGTTATTTTTATGGGGTGTAACAAAGGAGAAATTGAGCTTGGCTTCTCAAATATGACTCAAGATGATATTCAAACAGCACTTAGGAGTTTGTTTCCAGAAGAATTTTGTAGACAAATCCAACCAATAGATCCAAATCCACCATCCTCATCTTCATCATCATTGAGATCATTATCCAAAGGTAGCCCTGAATATTCATCTTTGATATTCACTAGTCCTGGAACTTCTCAATCAAATTTCCCTGAAACTCTTAGAGGGATAGTTCCTACAATGCCACCTTTGTTACCAAATACAAACACACATCAACAAACCCTTCAAGCATTGCCTCAAGTCACTACAACTCATCAATTCCCTTCACCAGATAATGAACAAGATGAAATTATGAGATCAATACTATATATTTTAACTTCACCTTCTTCAACTTCTCATCATCATCATCAAAATATGCCTTATAATAGTGCTTTCAAGAGGTATAGACCAAGTTTAGGACCTAGTATAATGTCACAAATGGGGTCCAAATTCATGAAACAAAACATGCTGAATAGGTCATTTGCATTCTTTAGAAACTTAAATTTGTCAAGAATGAGAGAACATATTCAAGCTACACATCCTACTAGTACACAGCTACATCACATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAATGAGAATTTTCAGGCACTTAGAACATTACTTCCTCCTGGAACTAAGAAAGACAAAGGTTCTATACTAACATCAGCAAAGGAGACATTGAAATCTTTGATGGCTGAAATTGAAAAGCTAAGCAAAAGAAATCAAGAGTTGGTGTCACTAGTGCCAACAAAAGAATCTAATACTGAAAAAATCAAAGCTAGCTTCTCATCAAATCAAAGATGGAATGTTCAAGTTTCACATATACCACAATCAAGCTCATCACAAGATAGAAATGTAGAATTGCAAGTGAATTTAAGAGGCCAAGTTTCTCAAGTTGATATATTGATTCGATTATTGGAATTCTTAAAGCATGATCAAAATGTGAGTTTGATTTCTATGGGTGCAACACAAGGGAATGATCTTCATCAATTAACTTTCAGACTAAGGATTATTGAGGGAAGTGAATGGGACGAGTCTACCTTCCAGGAAGCAATAAGAAGATTGGTTACTGATTTGATACAGTGGCAAGGAGACAAATAG 1533 0.3646 MHPMEGVFSLPEAARTDFLHSLVQYLGCTYICLWSSDPISNNRLIFLDGFYNQPSTSLGSVAQELFNHYQSLTFDINNDCVPGLAFKNQRPYLLLQQLDLLRLASTEIQTQFFQEARIKTVIFMGCNKGEIELGFSNMTQDDIQTALRSLFPEEFCRQIQPIDPNPPSSSSSSLRSLSKGSPEYSSLIFTSPGTSQSNFPETLRGIVPTMPPLLPNTNTHQQTLQALPQVTTTHQFPSPDNEQDEIMRSILYILTSPSSTSHHHHQNMPYNSAFKRYRPSLGPSIMSQMGSKFMKQNMLNRSFAFFRNLNLSRMREHIQATHPTSTQLHHMISERRRREKLNENFQALRTLLPPGTKKDKGSILTSAKETLKSLMAEIEKLSKRNQELVSLVPTKESNTEKIKASFSSNQRWNVQVSHIPQSSSSQDRNVELQVNLRGQVSQVDILIRLLEFLKHDQNVSLISMGATQGNDLHQLTFRLRIIEGSEWDESTFQEAIRRLVTDLIQWQGDK* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0145 510 Coils Coil 364 391 - -
Lan15g0145 510 MobiDBLite consensus disorder prediction 159 179 - -
Lan15g0145 510 MobiDBLite consensus disorder prediction 162 179 - -
Lan15g0145 510 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Lan15g0145 510 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 503 IPR044658 -
Lan15g0145 510 Pfam Helix-loop-helix DNA-binding domain 329 374 IPR011598 GO:0046983
Lan15g0145 510 Gene3D - 324 403 IPR036638 GO:0046983
Lan15g0145 510 SMART finulus 331 380 IPR011598 GO:0046983
Lan15g0145 510 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 389 IPR036638 GO:0046983
Lan15g0145 510 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 503 - -
Lan15g0145 510 CDD bHLH_AtbHLH_like 330 382 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0145 Lan-Chr15 1656699 1662014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0145 15 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.858 2.95e-99 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan15g0145 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0145 - - gmx:100807098 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0145 15 1656699 1662014 Lan14g0133 14 1643156 1647525 LSH
Lan1g1268 1 22491412 22495504 Lan15g0145 15 1656699 1662014 PCT
Lan15g0145 15 1656699 1662014 Lan1g1268 1 22491412 22495504 PCT