Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0137 ATGATTCCTACTAATCATTATTCAGTATCCTCTACTATGCCTTTAGATCTTAATGAAGATCAAAGCTACCAGCTTTTTAGTACAAACTATGAAGCTTCTTATGCAACTTCTTCTGATCTATTATACCATCAAGCCTCTTCTTCAAATTCTTCTCTATTAAATCCTGAATTCTTGCAACCTGGACATGGATCTTACCATCAGGAACCAAATCACTTAGGAAGTGATGAAGAGGGTGAGAAGATTGTTCCTTCTAGTGGATCATGGGATCATATTGGAGTTGAAAGCAGAAGTAAACTAAAGGTGAAAGTACTTTGGAAGAAAGAAGAAGGAAATGAAAATCTTGAAGCTGAGGATGGTTCAGTGAAGTGGATGTCTCCAAAGATGAGAATAATGCATAGGATGGCGGTATCAGATCAAACTGGTTCTGATATAACAGGCATCTCCAAGCAGAAGTTTGAACAGCAAAAGCAACATTTATCACCTCTTGGAAATGATAATAGCACCAATTCTTCAAACCAAAGCAATATCACTGATAGGTTTTGTTCTTCAAACTTCAAGCAGATGTTTGAAGAACAAAAGCAACAGTTTTCACTTCAAGGAACTTCTGATAATAGTGGCAACAACTCTTCAAACAATAATAACATCACTGTTAGGGTTTGTTCTGATTGCCACACCACCAAGACCCCTCTATGGAGGAGTGGACCAAGAGGTCCAAAGACACTTTGCAACGCCTGTGGGATTCGACAAAGGAAGGCGAGACGTGCCATGGCCGCAGCTGCAGCTTCAACTGCAGCATCGGCCGGTGGCACAATTCTCATGGCGGCTGAGCCAACACATGTGAAAGGAAAGAACTTACAAAGCAAAGAGAAGAAATCAAAAAATAAGCTGACACCACAGAAGAAAATGAAGCCCAAACTTGGTTGCAAGCCATGCATAGGTAGAAGAAAGAAGTTTAGTTTTGAGGATTTGACAATAAGTTTGAGTAAGAATTTGGCACTTCAACAAGTTTTCCCACAGGATGAAAAAGAAGCTGCAATCATGCTCATGGCTTTATCTTATGGCTTACTTCATGGCTTTCCCTCAGATCGTTACTTAGATTAA 1101 0.3978 MIPTNHYSVSSTMPLDLNEDQSYQLFSTNYEASYATSSDLLYHQASSSNSSLLNPEFLQPGHGSYHQEPNHLGSDEEGEKIVPSSGSWDHIGVESRSKLKVKVLWKKEEGNENLEAEDGSVKWMSPKMRIMHRMAVSDQTGSDITGISKQKFEQQKQHLSPLGNDNSTNSSNQSNITDRFCSSNFKQMFEEQKQQFSLQGTSDNSGNNSSNNNNITVRVCSDCHTTKTPLWRSGPRGPKTLCNACGIRQRKARRAMAAAAASTAASAGGTILMAAEPTHVKGKNLQSKEKKSKNKLTPQKKMKPKLGCKPCIGRRKKFSFEDLTISLSKNLALQQVFPQDEKEAAIMLMALSYGLLHGFPSDRYLD* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0137 366 Gene3D - 216 305 IPR013088 GO:0006355|GO:0008270
Lan15g0137 366 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Lan15g0137 366 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Lan15g0137 366 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 185 358 - -
Lan15g0137 366 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 182 - -
Lan15g0137 366 MobiDBLite consensus disorder prediction 192 214 - -
Lan15g0137 366 MobiDBLite consensus disorder prediction 52 88 - -
Lan15g0137 366 SMART GATA_3 214 266 IPR000679 GO:0006355|GO:0043565
Lan15g0137 366 ProSiteProfiles GATA-type zinc finger domain profile. 218 250 IPR000679 GO:0006355|GO:0043565
Lan15g0137 366 CDD ZnF_GATA 219 251 IPR000679 GO:0006355|GO:0043565
Lan15g0137 366 MobiDBLite consensus disorder prediction 152 177 - -
Lan15g0137 366 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 254 - -
Lan15g0137 366 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 185 358 - -
Lan15g0137 366 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 182 - -
Lan15g0137 366 MobiDBLite consensus disorder prediction 283 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0137 Lan-Chr15 1416204 1418407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0137 197 358 C2C2-Gata Transcription Factor Family AT4G26150 43.386 2.99e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan15g0137 GATA 6.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0137 - - lang:109328146 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1009 12 16788939 16791059 Lan15g0137 15 1416204 1418407 PCT
Lan15g0137 15 1416204 1418407 Lan12g1009 12 16788939 16791059 PCT