Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0126 ATGACAGAACAAACAAAGTTCAGCGTTCTGTGCAGTCTCTTCACATGGACACAGAGAACAAAGTCTTCGTTCAAGAAACGTTCCAAGTTTCGCAAATTCCTCGATTCATTTTGCACCGATGGTAACTTCTTCCCCGCTATTCGCTTGATTCTCCCTAACCTTGATCGCGAACGAGGCACCTATGGCCTCAAGGAGCACGTGCTCGCCACGTGCCTTATTGATGCCCTTGCCATTTCTAAAGACTCCGACGACGCCGTTCGACTCATTAATTGGCGTAAAGGTGGCGCCAAAACCGGTTCCAATGTTGGTAACTTTGCCCTTGTTGCCACCGAGGTGCTGCAGCGTAGGCAAGGGACAGCTTCAGGTGGATTGACAATAAAGGAGCTGAATGACTTGCTTGATCAGTTGTCTTCGAGTGAAAACAGGGCTGAGAAGACTTTGGTATTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATCATCATGATAATCCTCAAAGATCTAAAGCTTGGATTTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGATTTGTTTAATGTGACATGTGACTTAAAATTGGTTTGTGAAAAGCTGAGGGATCGGAACCAACGTCATAAGCGTCAGGATATTGAAGTTGGAAAAGCTGTACGCCCTCAATTGGCTAAGAGAGTTGCTAATGCAACTGACGCATGGAAGAAGCTACATGGGAAGGAGGTAGTTGTTGAATGCAAATTTGATGGTGATCGCATTCAAATTCATAAAAATGGAACGGAGATACACTACTTCTCCAGGAACTTTCTTGATCATTCTGAATATGCACATGCAATGTCAGAAATCATAACACAGAACATTATTGTTGATAGGTGCATACTTGATGGTGAAATGTTGGTCTGGGACACATTCTCGAATCGTTTTGCCGAGTTTGGCTCAAATCAGGAAATAGCAAAGGCAGCAAGGGATGGACTTGACGGTGATAGACAGTTATGCTATGTCGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCATCAAACTTTGAAGGAAAGGCATGAGATTCTCCGTAAAGTTTTGAGGCCAGTGAAGGGTCGATTGGAAATTTTAATACCTAATGATGGTCTCAATAGCCATCGTTCTGCTGGTGAACCATGTTGGTCATTTATTGCTCATAATGTGGATGAAGTGGAGAGATTTTTCAAAGCCACCATAGAGAATAGAGATGAGGGTATTGTTGTGAAAGACCTCAGTTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAGTTAAAGCCTGAATATGTTCATCCTAGTTCTGATCTGGACGTACTTGTCATAGGAGGCTACTATGGATCTGGACGACATGGAGGAGAGGTTGCCCAATTCTTGGTGGGCCTTGCAGAACGTCCATCCCCAAATACACATCCCAAGCGATTTGTCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAACTTGATGCTTTAGTTACCAAACTAAAACCTTACTTCAGTAAGTATGAATATCCCAAGAAGAGGCCACCAAGTTTTTATCAAGTTACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCAGAGAAATCAGTTATTCTTTCTATAACCAGTGATATCCGAACTATAGATTCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTCGGATTGACAGGGTGAGGTACGACAAACCCTGGAGTGAATGCCTTGATGTACAATCATTTATAGAACTAGTGCATTCTAGCAATGGCACCACACAGTGGAATACAGGATTTGGCAAGGAACAGGATAGTGAACCAAAAAAAATGAAATCTTCTACAAGGGGACAGAAGAAAATATTGTCCATTGTTCCATCTCATTTAATTCAGACTGATGTTTCCAATGTTAAAGGGGGCTCCTTAATATTTTCGAATATGATGTTTTACTTTGTTAATGTGCCACCATCTTATTCTCTCGAGTCCTTGCACAAGATGGTTGCTGAAAATGGAGGAACTTTCTCGATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGGTTTAAATTCGAAGCAGCTAAACGTCATGGTGATATAATTCATTGTACTTGGGTATTAGCTTGCTATGAACAAAAGAAGCTTGTCCCTCTTCAGCCAAAGTACTTCCTCTTCCTATCTGAGCAAACAAAGAATAAGTTACAAGAAGAAATCGACCAGTTCTCAGACTCTTACTACTTGGATCTTTCTCTTAAAGACATGATACAGCTCTTAAGCAATATTCATAGGCCAGAAGATATCAGTACTATAGATCATTACAAGAAAAAATATTGCCCAAAGGATAAGTGGTGCTTCTTTTATGGATGCTCTATTTATTTCCACACTGCAATACCATCATTAAAAGGAGATTGGGAAGTTCTATTGGGAATTTCTTTGAGAAGATTCAGGCTTGAAATTCTCATGGGTGGTGGAAAAGTTACTGATAATCTTACTCGTGCAACCCATTTAGTGGTTTTGTCAGTGCCAAGATATCATACCGACATTGAAGAAATACAGAGAAGTTTCACTTCAGTAGAGAGGAAATTTCTCCAGAGCAAGAAGTTGAATATAGTTAAATCCCAGTGGTTAGAAGATTGTTTGGACCATGGCCAAAGATTACCAGAAGAAACTTATAGCTTGAAGCCCCTTGGAACAGAGGAGTCAACAGATGAAGATATCGAACCTGACTTGGCGCTAGAGGCTCATATGGGTGAAGATAATGTAACAGACCAAAATATATCTGTCTCTGACAAGGAAGTTAAACAGAGAACTGTGAAAACTGCTCATGGTGAAGGTAAGGCCTTCATGTCCCAAGAGAAGGGTGGCCAAAGGAAAAGAGGAAGACCTCCAGGCAGAGGCAGTAAAAATGCAAAACCAGCTGGCAACCAAGCTCAAAGAGCACGACCGCGAACTGTGAGAAAGCGTGCTAAAATATGTGAACATGAATCAGACGAAAATGATTCTCATGACAAAAAACCATGCGAGGAGATTGACACTGCCAAAGGAAGTGTTGATTTTTACCGGAGACATTCAGAACCCCAAGAGACTGAGAAGCACACAACTTCTGAAGTTAGTGAAACAAGAGAAAGTCTCGAGCGAAACAAGGAAGTTATGTGTGAGGATTTGAAGGACAGTGAACCCAGAAGAATGTTTGTTCCGGAAATTGAAATGACTAACAACAACAATGACCAAAGCAGTGAAGTGACTGACAAACTTGAAATATTGACTGATCCAGTGCAGTCAATGTTATTTGACATGATTCCTAGCCTTGCTACAAAGAAAGTTGAGGAACCTAAGAATCATAATATTGGAGAAGAGAAGCCATCAGAAATCATCAATGCAGAGCCTTCAACAACTACAAAGAAGAAGAAAGTTAGCTATAAGGATGTTGTTAATGACTTTCTCAAGGATGGGTAG 3504 0.4087 MTEQTKFSVLCSLFTWTQRTKSSFKKRSKFRKFLDSFCTDGNFFPAIRLILPNLDRERGTYGLKEHVLATCLIDALAISKDSDDAVRLINWRKGGAKTGSNVGNFALVATEVLQRRQGTASGGLTIKELNDLLDQLSSSENRAEKTLVFSTLIQKTNAQEMKWIIMIILKDLKLGFSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATDAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSEIITQNIIVDRCILDGEMLVWDTFSNRFAEFGSNQEIAKAARDGLDGDRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVLRPVKGRLEILIPNDGLNSHRSAGEPCWSFIAHNVDEVERFFKATIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYVHPSSDLDVLVIGGYYGSGRHGGEVAQFLVGLAERPSPNTHPKRFVSFCRVGTGLSDDELDALVTKLKPYFSKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSVILSITSDIRTIDSEVFAAPYSLRFPRIDRVRYDKPWSECLDVQSFIELVHSSNGTTQWNTGFGKEQDSEPKKMKSSTRGQKKILSIVPSHLIQTDVSNVKGGSLIFSNMMFYFVNVPPSYSLESLHKMVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHCTWVLACYEQKKLVPLQPKYFLFLSEQTKNKLQEEIDQFSDSYYLDLSLKDMIQLLSNIHRPEDISTIDHYKKKYCPKDKWCFFYGCSIYFHTAIPSLKGDWEVLLGISLRRFRLEILMGGGKVTDNLTRATHLVVLSVPRYHTDIEEIQRSFTSVERKFLQSKKLNIVKSQWLEDCLDHGQRLPEETYSLKPLGTEESTDEDIEPDLALEAHMGEDNVTDQNISVSDKEVKQRTVKTAHGEGKAFMSQEKGGQRKRGRPPGRGSKNAKPAGNQAQRARPRTVRKRAKICEHESDENDSHDKKPCEEIDTAKGSVDFYRRHSEPQETEKHTTSEVSETRESLERNKEVMCEDLKDSEPRRMFVPEIEMTNNNNDQSSEVTDKLEILTDPVQSMLFDMIPSLATKKVEEPKNHNIGEEKPSEIINAEPSTTTKKKKVSYKDVVNDFLKDG* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0126 1167 PANTHER DNA LIGASE 4 2 910 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Lan15g0126 1167 SUPERFAMILY Nucleic acid-binding proteins 450 600 IPR012340 -
Lan15g0126 1167 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Lan15g0126 1167 ProSiteProfiles BRCT domain profile. 839 909 IPR001357 -
Lan15g0126 1167 MobiDBLite consensus disorder prediction 1004 1080 - -
Lan15g0126 1167 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lan15g0126 1167 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Lan15g0126 1167 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lan15g0126 1167 ProSiteProfiles ATP-dependent DNA ligase family profile. 335 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lan15g0126 1167 SUPERFAMILY BRCT domain 655 740 IPR036420 -
Lan15g0126 1167 CDD Adenylation_DNA_ligase_IV 214 445 IPR044125 GO:0005524
Lan15g0126 1167 SMART BRCT_7 653 729 IPR001357 -
Lan15g0126 1167 SMART BRCT_7 814 899 IPR001357 -
Lan15g0126 1167 MobiDBLite consensus disorder prediction 1124 1152 - -
Lan15g0126 1167 CDD OBF_DNA_ligase_IV 450 592 - -
Lan15g0126 1167 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lan15g0126 1167 MobiDBLite consensus disorder prediction 933 1097 - -
Lan15g0126 1167 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 182 442 - -
Lan15g0126 1167 Gene3D BRCT domain 666 779 IPR036420 -
Lan15g0126 1167 Coils Coil 126 146 - -
Lan15g0126 1167 Pfam ATP dependent DNA ligase C terminal region 466 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lan15g0126 1167 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lan15g0126 1167 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Lan15g0126 1167 Gene3D - 447 605 IPR012340 -
Lan15g0126 1167 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Lan15g0126 1167 MobiDBLite consensus disorder prediction 607 627 - -
Lan15g0126 1167 Pfam BRCT domain, a BRCA1 C-terminus domain 653 736 IPR001357 -
Lan15g0126 1167 SUPERFAMILY BRCT domain 796 910 IPR036420 -
Lan15g0126 1167 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Lan15g0126 1167 Gene3D BRCT domain 797 909 IPR036420 -
Lan15g0126 1167 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0126 214 601 Core DNA Replication Machinery Family AT1G08130 27.723 3.40e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0126 K10777 - gmx:100816002 1839.31