Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0108 ATGTCAAGCCACAATTATCGTTTACTAAACTGGCACTACACAGAGTTAGATGACATTGATCATCAAATTAGAGGAAAATCCCTTTTCTTCATAATCCTCATCTTCTCCATTTCCCTTTTCATCACCGTTCTCTTCTTCTACACGCGCTGGGTCTGCCGCTACTACGGCCACCTCCCACTCACCTTCTCCACCACACGCGCCGCCCAATCCAGCCACGCGCCGCCTCCACCTCCGCCACAGGGACTTGACCCGAAGTTGATTAAAAAACTGCCCATCATGTTGTACCAGGCGGCGTTGGATGATGACGGCGGCGCGTGGGAGGAAAGCGAGTGTTGTATATGTTTGGGAGAGTTTAGAGAAGGGGAGAAAGTTAAGGTTTTGCCAAAGTGTGAACACTGTTTTCATTGTGAATGTGTTGATGAATGGCTTATTCATCATTCAAGTTGTCCATTGTGTAGATCTTCTCTTAAGGTTGAATCTTCTTTTCCTAACATTTTGATTCAAGAACCACCAATTAGAATTCATATCCAATTCTAA 537 0.4507 MSSHNYRLLNWHYTELDDIDHQIRGKSLFFIILIFSISLFITVLFFYTRWVCRYYGHLPLTFSTTRAAQSSHAPPPPPPQGLDPKLIKKLPIMLYQAALDDDGGAWEESECCICLGEFREGEKVKVLPKCEHCFHCECVDEWLIHHSSCPLCRSSLKVESSFPNILIQEPPIRIHIQF* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0108 178 PANTHER RING-H2 FINGER PROTEIN ATL66 2 168 - -
Lan15g0108 178 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lan15g0108 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 168 IPR044675 -
Lan15g0108 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
Lan15g0108 178 SUPERFAMILY RING/U-box 86 159 - -
Lan15g0108 178 Pfam Ring finger domain 110 153 IPR001841 -
Lan15g0108 178 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0108 Lan-Chr15 744079 744886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0108 8 161 C3H Transcription Factor Family AT3G11110 43.396 8.83e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0108 - - lang:109342610 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0108 15 744079 744886 Lan3g0964 3 21282268 21283021 LSH
Lan15g0108 15 744079 744886 Lan2g1151 2 22772688 22773387 PCT
Lan15g0108 15 744079 744886 Lan9g1344 9 20596499 20597407 PCT
Lan2g1151 2 22772688 22773387 Lan15g0108 15 744079 744886 PCT
Lan9g1344 9 20596499 20597407 Lan15g0108 15 744079 744886 PCT