Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0107 ATGGTATCATACATCATGGCTTCTAAACATAACAATTCCATCCTTGGACGCATTGTTTTGGCTATTCTTATTGCAAGCTTTTTCACTCCAAACTTAACATATGCCGAAAAATCCAAGATAATGGGCTTTGAAATGAATGCAATTGATAAATGTTGGAGATCAGATCCAGAATGGAGGAAAAATCGGCCACAACTTGCTACATGCTCTGTGGGTTATGCCGGAAAGATGACAAATAACATTGGTGAAGGCCTCATTCATTATAAAGTTATTGATCCTAGCGATGACGCTATAAACCCTAAACCTGGCACCTTGAGGTATGGAGCATCTGTGATTCAAGGGAAAGTCTGGATTACATTCGAAAGAGACATGCTAATTCAGCTGGTGAAACCACTTCTCATTAGTAGTTTCACAACCATTGATGGTAGAGGATTTGACGTCCAAATTGCTAATAATGCATGCTTAATGATCTTTAAGGCTACGAACATAATAATCCATAGCATTGGGATTCATCATTGTAAATCTCAAGCTCCTGGGATAGTGATTGGTCCTAATGGAAAGGTTATGCCCTTGGGTCAAGTAGATGGGGATGCGATTCGTTTGGTTAGTGCTTCAAAGATTTGGATTGATCATAACACACTTTCTAATTGCGAAGATGGTCTTCTTGATGTCACACGGGGTTCCACTGATGTAACTATCTCTAATAACTGGTTCAAATTTCAAGACAAGGTTATGCTTCTTGGACATGATGATGGATATGTTAGAGACCAAAACATGAAGGTTACTGTTCTATACAACCATTTTGGACCTAATTGCAACCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCAAATAATTTTTACTTGGGATGGTTGCAATATGCCATTGGTGGAAGCACAGAACCTAGCCTCAAAAGTGAAGCAAACCTATTTGTAGCACCAACATCAGGGAGAAAGGAGATCACATGGAGAAAAGACAATAATCAAAATAGGAATGGAGGGGAATTTCATTCAATAAATGATATTTTCGAGAATGGAGCATCTTTCATAGCTACAAAAGGTGGAAAGGTGCGAAAGCCGAATTATACCAAAGAACAAGTTTTTATAGTTGCTGATGCCAAATCTGTGAGATCATTGACACGAGCATCAGGTGTATTACGATGTGGAAAAACTATATGCTAA 1188 0.3872 MVSYIMASKHNNSILGRIVLAILIASFFTPNLTYAEKSKIMGFEMNAIDKCWRSDPEWRKNRPQLATCSVGYAGKMTNNIGEGLIHYKVIDPSDDAINPKPGTLRYGASVIQGKVWITFERDMLIQLVKPLLISSFTTIDGRGFDVQIANNACLMIFKATNIIIHSIGIHHCKSQAPGIVIGPNGKVMPLGQVDGDAIRLVSASKIWIDHNTLSNCEDGLLDVTRGSTDVTISNNWFKFQDKVMLLGHDDGYVRDQNMKVTVLYNHFGPNCNQRMPRIRHGYAHVANNFYLGWLQYAIGGSTEPSLKSEANLFVAPTSGRKEITWRKDNNQNRNGGEFHSINDIFENGASFIATKGGKVRKPNYTKEQVFIVADAKSVRSLTRASGVLRCGKTIC* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0107 395 Gene3D - 45 389 IPR012334 -
Lan15g0107 395 PRINTS Pollen allergen Amb family signature 93 118 IPR018082 -
Lan15g0107 395 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Lan15g0107 395 PRINTS Pollen allergen Amb family signature 194 215 IPR018082 -
Lan15g0107 395 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Lan15g0107 395 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Lan15g0107 395 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Lan15g0107 395 PRINTS Pollen allergen Amb family signature 367 390 IPR018082 -
Lan15g0107 395 SMART amb_all 122 319 IPR002022 -
Lan15g0107 395 Pfam Pectate lyase 133 313 IPR002022 -
Lan15g0107 395 PANTHER PECTATE LYASE 8 392 - -
Lan15g0107 395 PANTHER PECTATE LYASE 18-RELATED 8 392 IPR045032 GO:0030570
Lan15g0107 395 SUPERFAMILY Pectin lyase-like 42 389 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0107 Lan-Chr15 733501 735564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0107 76 323 Polysaccharide Lyase AT5G09280 68.952 6.75e-136 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0107 K01728 - gmx:100780437 624.394