Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0080 ATGAATTCACCATCCGCGCAGTTTGTTCCCTCAAGAAGCATGAGTGTTTACGATCCTATCCACCAAATTAATATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAGGTGCAACTATACCGTTAATCGATGAGGCAGACTTAAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATACTAGGAACACCTAACAAGTATGACCAAGAAGCAAATAAACCTGCGGTTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGCAAGAGTCGTTTACGGAAAAAGGCCTATGTGCAGCAGTTAGAGTCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACAAGCAAGACATCAGGGTTTATATGTTGGTGGAGGGTTGGATTCTAATAATATTGGTTTTGCTGCACCTGTAAATTCAGGAATTACGACCTTCGAGATGGAGTACGGAATCTGGGTGGAAGAGCAAAATAGACAAATCTTAGAACTGAGAACTGCTTTAAATGCTCATATTGGTGATATGGAGTTACGGATACTAGTAGAAGGCATTATGAACCACTATTCCGAGATATTTCGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTATGTTATGTCCGGCATGTGGAAAACGACAGCTGAAAGATTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTCCTTCTTCCTTTGATTGAACCGTTGACGGAGCAACAAAGGTTGGATATCCAAAACCTTGGGAAATCATGTCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGACAGACTACAGGAAACACTTGCTGAAAGTGTAGCAGCCGGACAACTCATCGAAGGATCGTATATTCAACAGATGGGTTCGGCAATGGAGAAGTTGGAAGCTCTGGTGGGCTTTGTGAATCAGGCTGACCATCTTCGGCAGGAAACCTTGCACCAAATATCTCGAATACTGACAACCCGTCAGGCTGCTCGATGCTTGCTTGTGTTGGGGGAATATTTCCAACGCCTTAGAGCTTTGAGCTTACTATGGTCGAATCAACCTCGTGAACCTGCATAG 1092 0.4359 MNSPSAQFVPSRSMSVYDPIHQINMWGEGFKSNGNLGATIPLIDEADLKFDSQSEDASHGILGTPNKYDQEANKPAVDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELEQARHQGLYVGGGLDSNNIGFAAPVNSGITTFEMEYGIWVEEQNRQILELRTALNAHIGDMELRILVEGIMNHYSEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLLPLIEPLTEQQRLDIQNLGKSCQQAEDALSQGMDRLQETLAESVAAGQLIEGSYIQQMGSAMEKLEALVGFVNQADHLRQETLHQISRILTTRQAARCLLVLGEYFQRLRALSLLWSNQPREPA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0080 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Lan15g0080 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 362 - -
Lan15g0080 363 Pfam Seed dormancy control 166 240 IPR025422 GO:0006351|GO:0043565
Lan15g0080 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Lan15g0080 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 121 IPR004827 GO:0003700|GO:0006355
Lan15g0080 363 SMART brlzneu 75 146 IPR004827 GO:0003700|GO:0006355
Lan15g0080 363 Coils Coil 98 125 - -
Lan15g0080 363 SUPERFAMILY Leucine zipper domain 79 120 IPR046347 GO:0003700|GO:0006355
Lan15g0080 363 Pfam bZIP transcription factor 79 113 IPR004827 GO:0003700|GO:0006355
Lan15g0080 363 Gene3D - 78 127 - -
Lan15g0080 363 PANTHER TRANSCRIPTION FACTOR TGA1 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0080 Lan-Chr15 555028 561098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0080 1 363 Calmodulin-binding Proteins AT5G10030 69.505 0.0 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan15g0080 DOG1 2.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0080 K14431 - gmx:100793353 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0080 15 555028 561098 Lan3g0992 3 21625058 21629830 LSH
Lan1g1835 1 33384246 33387624 Lan15g0080 15 555028 561098 PCT