Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0079 ATGAGTATTTCCATGGTGGATCAATCTGATTCTTCTCCTCTCGTTCCTCCCAAACCTATTCTTCATCCTTCCGATATCGACCTCGAAGCTGGTCCTACCGAACAGATTCAATGCCGGATTTGTCTCGAAACCGATGGTAGGGATTTCATAGCTCCTTGTATGTGCAAAGGTACATCTAAATATGTACACCGTGAATGTCTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCCTTTGCTCACTGCACTACCTGCAAGGCTCCTTATCATTTGCGTGTTCATGTAGCTGCTGATAGGAAATGGCGTACCATGAAATTTCGGTTTTTCGTCACCAGAGACATTTTGTTTATTTTCATAGCTGTTCAGCTTGTCATTTCCTTACTGGCTTACTTGGTTTATCTAATCGATGGTTACCAGCAGTCTTGGCTTCGTATTCTCTGGGGATTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTGTTTTTTGCCTTGCTTGGCCTTTCGGGATGCTTCATTACATGTTATGATCGAAGAGTTCGCAATGATTTGGCACAACCTTGTAGAGAATTATGTCTTTGTTGCTGCCAACCTGGAGTTTGTGCAGACTGTCATTTACCAGGCACTCTCTGTATCTGGACTGACTGCACCGCTTGCTTTGAGAGTTGCGGAGCCATGGCAACGGAATGCGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTAATGTTCATAATTGCATTGATCCTTCTGGGACTTTTTACTGTAATTGGGATATTTTACAGTGTATTGGTGGCTACCATGGTAGGACAGCGAATATGGCAACGCCATTATCATATACTTGCAAAAAGGATGTTAACAAAGGAGTATGTGGTTGAAGACGTTGATGGAGAAATGACAGGGTCAGATTGGTCTCCCCCACTTCTCCCGCCGGAGCATATTCAGCAGCTGAAATCACTAGGCCTGCTATGA 984 0.4441 MSISMVDQSDSSPLVPPKPILHPSDIDLEAGPTEQIQCRICLETDGRDFIAPCMCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTMKFRFFVTRDILFIFIAVQLVISLLAYLVYLIDGYQQSWLRILWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCIWTDCTACFESCGAMATECGGCLGGAGEAGLPLMFIIALILLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPLLPPEHIQQLKSLGLL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0079 327 SUPERFAMILY RING/U-box 33 90 - -
Lan15g0079 327 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 327 - -
Lan15g0079 327 Pfam RING-variant domain 38 85 IPR011016 GO:0008270
Lan15g0079 327 CDD RING_CH-C4HC3_MARCH 38 86 - -
Lan15g0079 327 ProSiteProfiles Zinc finger RING-CH-type profile. 30 92 IPR011016 GO:0008270
Lan15g0079 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 100 IPR013083 -
Lan15g0079 327 SMART ringv_2 37 86 IPR011016 GO:0008270
Lan15g0079 327 PANTHER BNAA04G12620D PROTEIN 5 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0079 Lan-Chr15 536731 545549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0079 5 327 C3H Transcription Factor Family AT2G22120 83.642 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0079 - - lang:109328511 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0079 15 536731 545549 Lan14g0178 14 2142096 2155783 LSH