Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0054 ATGAAGAAATTTAACTCACACAACGCCACTAACACCACGCGCCACCATCACAATTCCCAACTTCAACCACCACCACCACCACCACCATCACCTCACGGTGGTAACTACTCCCGTCCTACTCGTCATTCCTTTTACCACTGGAAGCCTGGTGTCCACCCTCCCGGCAACAATTCCACCGTTCGCCGCCCTAATTTCGTCATCACGCTACTCCCCGGCCGCCGCTCCTTCCGGCGATATGACGTGGCGGCGGTTATCTCTGAATGCAACTCCAAGCCGGAGAATACGTCGTTCTCCGGCGGTGATCGCGTCACCGCCGTGCTTCGTTTCCGGCAGTGGTGCGACGCGCTCGACGCCGTGGGTTGGTTCTGGCAGAGTAGGTTGAAGGAAATTCACGATTTGACGCCGGAGCTTACGTCCTCCGTTTTTGCACGTTCGCACATGCACGAACTCGAACGTCGATTGAAAAACCTATTTTCGTACCATGTGAAGTGTTTGATGGAAGGGAAAGAAGTGAAACGATTGAGCGTTGAAATGGAACGGTTATCGAAGGAGATTGAGAGTGTTTCGAAGATGCTGAGTAAGCCGTTGCCGATTCCGGTTTATAATCAGAGAAAGGAGAAGAAGAAAGGGTTTGAAACTGAGAAGAAACTGATTGAGAGGAGAGTAAGGGAATTTAAGAATGCAATGGAGTGTTTAGTGAAGAAATTTGAAGAAGAGGAGGAGGAGGAAGAGGAGAATAGTGAGGTTGAGGATGAGGAAAGTGTTGCTTCTGTGTTTAAGTTTGAAGGAAGATTGGATTGGGTGAAGGTTCATTGCATGATCATGAGAGAAAGGCGCAGACTTGAAGAAGGGTTGCCAATTTATGCTTATAGGACTGATATTATTCAGAATGTTCATTCTCAGCAGATAACTGTATTAATCGGAGAGACTGGTTCTGGAAAGAGTACACAGCTGGTACAGTTTCTAGCTGATTCAGGTATTGGTGCTAATGAGTCCATTGTATGCACCCAACCTCGTAAAATTGCAGCTAAATCGGTGTCTCAAAGGGTCCAGGAAGAAAGCAGTGGATGTTACGGAGACAATTCAATCGTGTGTTATTCTACATTTTCATCCTCACACCGGTTTGATTCCAGAATTACATTCATGACAGACAACTGTTTATTGCAGCACTACATGAGTGACAAGAATCTTCTTGGGGTCTCATGCATCATAATTGACGAGGCTCATGAAAGGAGCTTAAATACTGATTTACTGTTGGCATTGATCAAGAATTTACTCTCTCGGAGGGTTGACATGCGGCTTGTCATTATGTCTGCTACGGCCGATGCAAAACAGCTATCTGATTATTTCTATGGATGTGGAATTCTTCACGTGCTTGGGAGAAACTTTCCGGTGGATGTGAGATATGTTCCTTCTGACAACATGGGACATGCTGGTTCTGCTGTTATTGCCTCGTATGTTTCTGATACTGTCAGAATAGCAACTGAAATTCATAAAACAGAAAAAGAGGGATCTATCCTTGCCTTTCTGACCTCCCAGCTAGAAGTAGAGTGGGCTTGTGAAAATTTTAGAGATCCCTCTGCAGTTTCTTTGCCCTTACATGGAAAACTTTCATCCGAAGAGCAATTTCATGTTTTCCAGAACTACCCTGGAAAAAGAAAAGTGATATTTGCAACAAATCTTGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGTTTTGTTAAAGACAGTCGATTTGACCCTAGCAGTGGGATGAATGTACTTAAGGTTTGCCCGATCAGCCAGAGTTCTGCTCTTCAACGGGCTGGCCGTGCTGGGAGAACTGAGCCTGGTTGGTGCTATAGACTGTACTCGGAAGCTGATTATCAGTCTATGGAACCAACTCAAGAACCAGAGATTCGGCGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTTGCTTTAGGAGTGAAGAATGTGCAGGAATTTGATTTTGTGGATGCTCCAAGTTTTAGTTCTATTGAGATGGCAATCAAGAACCTAATTCAACTAGGAGTCATTAGACTGAACAAAAATGTTCATGAATTAACACATGAAGGCACATACTTGGTAAGAATGGGGGTCGAACCTAGGCTTGGTAAACTCATTCTTGGCTGTTCCCGTCATGGTTTGGGTAGAGAAGGTGTTGTCCTTGCTGCTTTGATGGCCAATTCCAGCACCATATTTTGCAGAGTTGGTAATGAAGACGATAAGAAAAGATCCGATTGTTATAAAGTTCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTACTCTCAGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAAGGGAGGAACAAATGGTGCTGGGAAAACAGCATCAATGCCAAATCAATGAGGAGATGCCAAGACACCATCATGGAGCTAGAATCTTGTCTTGAGCGTGAACTTTGCCTTGTTACTCCAAGTTACTGGCATTGGAACCCTTCTAAGCCCTCTGATTATGATAAGTATCTGAAAATGGTTATACTTTCTTCACATGCTGAGAATGTAGCCATGTACTCTGGATGCGATCAACTCGGTTATGAAGTGGCAAAAACTGGGCAACTTGTTCAACTACACCCATCTTGTTCATTGCGTGTATTTGCTCACAAACCTACTTGGGTGGTTTTTGGTGAACTTCTTTCAGTTTCTAATCAATATCTGGTCTGTGTAACTGCTTTTGACTTTGATTCACTGTACAACCTCTCCCCTCCTCCCCAATTTGATGTATCCAAGATGGAAAAGCGGAAGTTACAGATGAAGAGGCTGACTGGTTTAGGATCTATTCTTCTCAAGAAATTTCGTGGGAAAGGCAACAGTAGAATGATTGATCTGGTATCTCGGATACGAAAAGCTTGTATGGATGAGCGTATCTTCATTGAAGTCAACGCTGGCCAGAATGACATTCAGATATATGCTACTTTGCATGATATGGAAACTGCCCTTGGGTTTCTTAATGATGTTTTAGAATATGAGAAAAAGTGGCTTCATACTGAATGTGTGGAAAAATGTTTGTATCATGGTGTCTCACCTTCTGTAGCTTTGTTTGGGTCCGGGGCTGAGATAAAGCATTTGGAACTTGAGAAGCGTTTCTTGAGTATTGATGTCTGTCACCCAAACATAAATGCAATTGATGACAAGGAGCTCTTGATGTTTTTTGACGAGAACACCTCTGGTGGTATCTGTGCTGTACAAAAGTTCACAGGCATGGTGAAGGATGTTGAAGAGAGTGAAAAGTGGGGCAAGATAACATTTCTCTCCCCTGATGCTGCCGAAAGAGCTGCTGATCTAGATGGAGAGGAGTTTTGTGGTTCCCCCTTGAAAGTTGTTCCTTCACAAACTGCTGTGGGACGAGATAAAACATTTTTATTTCCTGCTGTTAAAGCAAAAATTATTTGGCCTCGCAGGCCTAGCAAGGGGTTTGGCATTGTTAAATGTGACATAAATGATGTCAATTTCATGTTGGGAGATTTCTTTAACCTTGCGGTAGGAGGGAGGTATATTCGATGTGAAGTTAGCACAAAGCATGCGGATTGTATTGCAATAGGTGGGATTGACAAAGAGCTCTCACAAAATGAAGTTTTAGATGAATTAAGAGCTGCAACAAGTAGAAGGATTCTAGATTTTTTCTTGGTCAGAGGAGATGGCATTGGAAATCCACCATGCAGTGTCTTGGAAGAGGCACTTCTAAAAGAAATTTCCCCCTTAATGCCCAAAATAAGCCCACACATTAGCTCTTGCAGAGTTCAGGTGTTCCCACCTGAGCCAAGGGATATATTCATGAAGGCTTTCATCACTTTTGATGGAAGATTACATCTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGGAAAGTGTTGCCGGGATGTTTTTCATGGCAGAAGATAATGTGTGAACGAATGTTCCATAGCTCCTTGGTATTTCCTGTACCAGTGTATAGCGTGATTAAGAAAGAACTGGAGGAAGTACTTGCAAGGTTCAATGATGTGAAGGGTCTTGAGCTTATCCAAGACAGATTTCCTAATGGTTCTTTCCGAGTGAGAATAACAGGCAATGCCACAAAGACAGTGGCAGACGTTAGAAGACCGCTGGAAGAACTATTAAGAGGGAAAACCATTGAAAATGACAACCTCACCCCGATAGTTGTACAGAGCATGTTGACCAGAGATGGCTTTAATCTTAAAAACTCATTACAGGAAGAGACAGGAACTTACATTTTTCTTGACAAGCACAACCTGAGTATCCGGGTTTTTGGTCCCCCTGACAAGGTCACTTTTGCTCAGCAGAAGCTGATTCAATTGCTGCTCTCTCTCCATGAAAGGAAGCAGCTAGAAATCCATCTGATAGGGAGAGATCTACCTCCTGATCTAATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTCCATGGACTAGAAGAGAAGGTACCTGGGGCAGATCCTATACTCGACACTCGCCGTCAGATTATCTTTCTTCGTGGCAACAAGGAGCTGAAACCAAGAGTGCAGGAAATAATTTTCGAGATTGCACGTTCATGTCATTCTTTGGTTCAGAGACTTTACACTGGACCTACTTGCCCAATTTGCTTGTGCGAGGTCGAAGATGGAGTGCGGCTTGAAGGCTGTGGTCATTTGTTCTGCCAGTCGTGTCTGGTGGAGCAATGTGAATCTGCTATACGAAACCAAGGTAGTTTCCCGATATGTTGTGCTCACAGTGGCTGTGGACATCCCTTTCTGATTGCAGATTTGAGATCCCTCTTATCATATGTTAAGTTGGAGGAACTTTTCAACGCTTCTTTGGGAGCTTTTGTGGCCTCAAGTGGGGGAATTTTCAGGTTTTGCCCATCTCCTGACTGCCCATCAATTTATCGTGTTGCTGATCCCGACGAACCTGGTGAGCCATTTGCTTGTGGAGTATGTTACTCAGAGACTTGTACCAGATGCCACTTAGAGTATCATCCATATGTTTCATGCGATAAATATGGAGAGTTCAAGAAAGATCCCGACTCGTCTTTGAAGGAGTGGTGCAAGGGGAAAGAACATGTCAAGTGTTGCCCTGTGTGTGGGTTTACAATTGAGAAAGTGGATGGCTGCAACCACATTGAGTGCAAGTGTGGAAAACATGTATGCTGGGTTTGTTTGGAGTTTTTTGGATGCAGTGAGGATTGTTATAGCCATTTGAGAAACATACACATGGCTTACATGTAA 5250 0.4366 MKKFNSHNATNTTRHHHNSQLQPPPPPPPSPHGGNYSRPTRHSFYHWKPGVHPPGNNSTVRRPNFVITLLPGRRSFRRYDVAAVISECNSKPENTSFSGGDRVTAVLRFRQWCDALDAVGWFWQSRLKEIHDLTPELTSSVFARSHMHELERRLKNLFSYHVKCLMEGKEVKRLSVEMERLSKEIESVSKMLSKPLPIPVYNQRKEKKKGFETEKKLIERRVREFKNAMECLVKKFEEEEEEEEENSEVEDEESVASVFKFEGRLDWVKVHCMIMRERRRLEEGLPIYAYRTDIIQNVHSQQITVLIGETGSGKSTQLVQFLADSGIGANESIVCTQPRKIAAKSVSQRVQEESSGCYGDNSIVCYSTFSSSHRFDSRITFMTDNCLLQHYMSDKNLLGVSCIIIDEAHERSLNTDLLLALIKNLLSRRVDMRLVIMSATADAKQLSDYFYGCGILHVLGRNFPVDVRYVPSDNMGHAGSAVIASYVSDTVRIATEIHKTEKEGSILAFLTSQLEVEWACENFRDPSAVSLPLHGKLSSEEQFHVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGFVKDSRFDPSSGMNVLKVCPISQSSALQRAGRAGRTEPGWCYRLYSEADYQSMEPTQEPEIRRVHLGVAVLRILALGVKNVQEFDFVDAPSFSSIEMAIKNLIQLGVIRLNKNVHELTHEGTYLVRMGVEPRLGKLILGCSRHGLGREGVVLAALMANSSTIFCRVGNEDDKKRSDCYKVQFCHCDGDLFTLLSVYKEWEALPREGRNKWCWENSINAKSMRRCQDTIMELESCLERELCLVTPSYWHWNPSKPSDYDKYLKMVILSSHAENVAMYSGCDQLGYEVAKTGQLVQLHPSCSLRVFAHKPTWVVFGELLSVSNQYLVCVTAFDFDSLYNLSPPPQFDVSKMEKRKLQMKRLTGLGSILLKKFRGKGNSRMIDLVSRIRKACMDERIFIEVNAGQNDIQIYATLHDMETALGFLNDVLEYEKKWLHTECVEKCLYHGVSPSVALFGSGAEIKHLELEKRFLSIDVCHPNINAIDDKELLMFFDENTSGGICAVQKFTGMVKDVEESEKWGKITFLSPDAAERAADLDGEEFCGSPLKVVPSQTAVGRDKTFLFPAVKAKIIWPRRPSKGFGIVKCDINDVNFMLGDFFNLAVGGRYIRCEVSTKHADCIAIGGIDKELSQNEVLDELRAATSRRILDFFLVRGDGIGNPPCSVLEEALLKEISPLMPKISPHISSCRVQVFPPEPRDIFMKAFITFDGRLHLEAAKALEQIEGKVLPGCFSWQKIMCERMFHSSLVFPVPVYSVIKKELEEVLARFNDVKGLELIQDRFPNGSFRVRITGNATKTVADVRRPLEELLRGKTIENDNLTPIVVQSMLTRDGFNLKNSLQEETGTYIFLDKHNLSIRVFGPPDKVTFAQQKLIQLLLSLHERKQLEIHLIGRDLPPDLMKQVVKNFGPDLHGLEEKVPGADPILDTRRQIIFLRGNKELKPRVQEIIFEIARSCHSLVQRLYTGPTCPICLCEVEDGVRLEGCGHLFCQSCLVEQCESAIRNQGSFPICCAHSGCGHPFLIADLRSLLSYVKLEELFNASLGAFVASSGGIFRFCPSPDCPSIYRVADPDEPGEPFACGVCYSETCTRCHLEYHPYVSCDKYGEFKKDPDSSLKEWCKGKEHVKCCPVCGFTIEKVDGCNHIECKCGKHVCWVCLEFFGCSEDCYSHLRNIHMAYM* 1750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0054 1749 MobiDBLite consensus disorder prediction 1 62 - -
Lan15g0054 1749 SUPERFAMILY RING/U-box 1539 1597 - -
Lan15g0054 1749 Pfam Helicase conserved C-terminal domain 496 614 IPR001650 -
Lan15g0054 1749 ProSitePatterns Zinc finger C2H2 type domain signature. 1724 1745 IPR013087 -
Lan15g0054 1749 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 401 410 IPR002464 -
Lan15g0054 1749 SMART ring_2 1540 1582 IPR001841 -
Lan15g0054 1749 Pfam Helicase associated domain (HA2) 676 770 IPR007502 GO:0004386
Lan15g0054 1749 Pfam IBR domain, a half RING-finger domain 1618 1672 IPR002867 -
Lan15g0054 1749 SUPERFAMILY RING/U-box 1694 1735 - -
Lan15g0054 1749 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 839 918 IPR011709 -
Lan15g0054 1749 ProSiteProfiles TRIAD supradomain profile. 1536 1749 IPR044066 -
Lan15g0054 1749 ProSitePatterns Zinc finger RING-type signature. 1556 1565 IPR017907 -
Lan15g0054 1749 ProSiteProfiles Zinc finger RING-type profile. 1540 1582 IPR001841 -
Lan15g0054 1749 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 103 1501 - -
Lan15g0054 1749 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1568 1664 - -
Lan15g0054 1749 PANTHER ATP-DEPENDENT RNA HELICASE 1568 1664 - -
Lan15g0054 1749 PANTHER ATP-DEPENDENT RNA HELICASE 103 1501 - -
Lan15g0054 1749 SMART ha2_5 675 771 IPR007502 GO:0004386
Lan15g0054 1749 SMART ibrneu5 1607 1672 IPR002867 -
Lan15g0054 1749 SMART ibrneu5 1673 1737 IPR002867 -
Lan15g0054 1749 Coils Coil 171 191 - -
Lan15g0054 1749 MobiDBLite consensus disorder prediction 20 34 - -
Lan15g0054 1749 MobiDBLite consensus disorder prediction 1 19 - -
Lan15g0054 1749 Gene3D - 637 680 IPR042035 -
Lan15g0054 1749 SMART ultradead3 283 468 IPR014001 -
Lan15g0054 1749 Coils Coil 208 253 - -
Lan15g0054 1749 Gene3D - 1651 1747 - -
Lan15g0054 1749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 793 IPR027417 -
Lan15g0054 1749 Gene3D - 227 461 IPR027417 -
Lan15g0054 1749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1537 1614 IPR013083 -
Lan15g0054 1749 SMART helicmild6 517 615 IPR001650 -
Lan15g0054 1749 CDD DEXHc_RHA-like 302 458 - -
Lan15g0054 1749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 655 IPR001650 -
Lan15g0054 1749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 459 IPR014001 -
Lan15g0054 1749 CDD SF2_C_RHA 463 623 - -
Lan15g0054 1749 Gene3D - 462 634 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0054 Lan-Chr15 337794 344895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0054 1555 1731 C3H Transcription Factor Family AT2G31770 27.473 2.66e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0054 K12818 - gmx:100810008 2512.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0054 15 337794 344895 Lan3g1029 3 22608354 22615073 LSH