Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0042 ATGGCACTTTCATTTCCACTTATGTTACAATTCTTGCTTCTTACCACAACTCTTACCTCTTCCTCTTTTGTTCAAGATCCTGAATATGTTGTCCAAGAAGTAGAAAAGAAGACCAATGATTCAAGGAGAAATTTAGCATTGTATTCTTGTGGAACAGGCAACCCTATTGATGATTGTTGGAGATGTGACCCAAATTGGGAAAGTAACAGAAAACATTTAGCAGATTGTGCTATTGGTTTTGGAAAACATACCATAGGTGGTAAAAATGGTCAAATATATATTGTCACTGACCCTAGTGATAACTCTAAGAACCCAAAATTAGGCACACTAAGACATGGTGTTATTCAAGAAGAGCCTTTATGGATAATATTCATGCATGACATGGTGATTAAGTTAAAGATGGATCTTCTAATGAATTCTCATAAAACAATTGATGGTAGAGGAGTAAATGTGCACATTGCAGAAGGACCTTGTATTAAAGTTGAATACAAGACTAATATTATAATACATGGTATTCATATACATGATTGTAAAAGTGGTGGTAGTGGCTATGTAAGAGATTCACCTAACCATGTTAGCATGAGAGGTAAATCAGATGGTGATGGTGTAACAATATTTGGTGGGAGACATGTTTGGATTGATCATTGTTCTTTGTCAAATTGTTTTGATGGATTAATTGATGTTGTTCATGGCTCAACATCTGTTACAATTTCTAACAATTATATGACACATCATAATAAAGTTATGCTTTTAGGACATAGTGATTCCTTTAAACAGGATAAGAATATGCAAGTTACTATAGCTTTTAACCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCTAGATGCAGGTATGGATACTTCCATGTGGTGAACAATGACTATACTCATTGGCAAAAGTATGCAATAGGTGGAAGTTCATCACCAACTATTTATAGCCAAGGCAATAGATTTCTTGCTCCAGATGATGAAAACCATAAAGAGGTGACTAAACATTTTCATTCATCAAAGAGTGGATGGAAGAACTGGAATTGGAGGTCTGAAGGGGACTTAATGTTGAATGGTGCCTTCTTTACACAGTCAGGAGCCGGAGCCCGAGCCCGAGCCGGAGCCGAAGCCGGAGTAGGAGCATCTCTTATGTATGCTAAGGCATCAAGCATGGTGGCAAGACCAACTAAGCTTGTAACTTCCATGACAGCAGGGGCTGGAGCTCTTGATTGCAGAAAAGGCTATATCTGCTAG 1242 0.3784 MALSFPLMLQFLLLTTTLTSSSFVQDPEYVVQEVEKKTNDSRRNLALYSCGTGNPIDDCWRCDPNWESNRKHLADCAIGFGKHTIGGKNGQIYIVTDPSDNSKNPKLGTLRHGVIQEEPLWIIFMHDMVIKLKMDLLMNSHKTIDGRGVNVHIAEGPCIKVEYKTNIIIHGIHIHDCKSGGSGYVRDSPNHVSMRGKSDGDGVTIFGGRHVWIDHCSLSNCFDGLIDVVHGSTSVTISNNYMTHHNKVMLLGHSDSFKQDKNMQVTIAFNHFGEGLGGRMPRCRYGYFHVVNNDYTHWQKYAIGGSSSPTIYSQGNRFLAPDDENHKEVTKHFHSSKSGWKNWNWRSEGDLMLNGAFFTQSGAGARARAGAEAGVGASLMYAKASSMVARPTKLVTSMTAGAGALDCRKGYIC* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0042 413 PANTHER PECTATE LYASE 18-RELATED 3 409 IPR045032 GO:0030570
Lan15g0042 413 Pfam Pectate lyase 137 318 IPR002022 -
Lan15g0042 413 PANTHER PECTATE LYASE 3 409 - -
Lan15g0042 413 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Lan15g0042 413 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Lan15g0042 413 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Lan15g0042 413 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Lan15g0042 413 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Lan15g0042 413 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Lan15g0042 413 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Lan15g0042 413 Gene3D - 53 406 IPR012334 -
Lan15g0042 413 SUPERFAMILY Pectin lyase-like 37 369 IPR011050 -
Lan15g0042 413 SMART amb_all 127 324 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0042 Lan-Chr15 259941 262693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0042 3 413 Polysaccharide Lyase AT5G63180 65.459 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0042 K01728 - gmx:100801136 647.121