Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0033 ATGATGGATGTGGCTGAGCTAGAAGAGAATCTGTTTGCAGCAAGTGATGCTAAGTTACATGGCGGAATGTGCGAGCAACTATCTGCGATATATTGCAAAATCTTGTCAATATTTCCTTCTTTGGAAGAAGCTAGGCCTAGGAGCAAATCTGGAATCCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGTCAAAGAGTGTTCTTCGGCACTGTTCAGACTGCAGCAAACTTTACCTGGCTATAACTGGGAGTTCTGTTCTTCTAAAATTTGAGAAGGCTAAGTGTGCTCTTGAAGGTAGTCTTAAACTGGTGAAAGATATTGTTCCACAATCTATTGGGTGTCAGATTGACGAAATTGTGAAGGAACTTGCAAGTATGGTATTTGCACTTGACCCATCTGAGAAGCAAATCGGGGATGACTTAATTGCATTGCTTCAGCAGGGGATACAGTTTAACGATTCTAGTGACAGTGGTGAACTAGAATATTTTCATCAGGCTGCTACTAGTCTTGGAATTATATCTTCAAGATCTGCTCTCACTGAAAGGAGAGCTTTAAAAAAACTCATAGAACGGGCTCGGTCTGAGGAAGACAAACGAAAAGAATCAATTATTGCATATCTTTTACACCTTATGAGAAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAGTGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATATCAAGAGGACAGTGTTCCTAGTGGTAATTGTCAGACCTTTAATAGACAGCTTTCTAAACTTAGTTCGTTTAATTTGAAGGCAACTAGTAGGAAATCCGGGCAGACGAACCTTCCACCTAATGAGTTAAGATGTCCAATATCTCTGCAACTTATGAGTGACCCCGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAAAAATGGTTTAGGGATGGACACAACACCTGCCCAAAGACCCAACAGGAACTTTCACATCTTTCATTAACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTCAACAGAATGGAGTTCCTATTCCTAAAGGTCCTCCTCAATCTCTTGATTTTAACTACTGGGGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTCAGCTCTTGCAAGCTGAATGGCGTAGAAGTAGTTTCTGTAGAAGAGAGTGCTATATCAGAGAAAACTGAGACGAATGCAACTGAAAGCTTGTCTACAGAAGAGGAAGATACCACGCATTATTTAAGTTATCTTAAAGTCTTGGCTGAAGGGAGCGATTGGAAGAAGAAGTGTGAAGTGGTAGAACGGTTAAGGCAATTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGATAATGGGTTTGTCGAAGCACTTTTGAAGTTTCTACAATCAGCTGTACATGAAGGGCTTTTGATGGCTCAGGAAAGTGGAGCTATGGCTCTGTTCAACCTTGCTGTGAATAACCACAGAAATAAGGAAACTATGATATCAGCAGGGGTCTTATCGTTATTGGAGGAAATGATATCAAATAGTAGTTCTTATGGTTGTGCAACAGCGCTCTATCTGAATCTTTCTTGTCTCGAAGATGCTAAGCCTATGATTGGATCGAGTCAGGCTGTCCAGTTCCTAATTCAGATTCTTCAAACCAACACTGATGTGCAATGCAAGCTAGATTCTCTCCATGCACTCTATAATCTCTCTACTGTGCCCTCCAGTATCCCAAACCTCCTTTCATCCGGCATCATTAATACCCTACAATCCGTTCTTGTAGGCCAGGGTGGTTCATTGTGGACCGAAAAATGCATAGCTGTTTTGATAAATTTGGCTGTTTCTCAAGTTGGAAGAGAGGAAATAATGTCAGCTCCCGGACTCATAAGCGCACTGGCTTCAATACTGGATACCAGTGAGCTCCATGAGCAGGAGCAAGCTGCGACCTGTCTCCTAATTTTGTGTAACAAGAGTGACAAATGTATTGAAATGGTCTTGCAAGAAGGGGTCATACCTGCATTGGTGTCAATATCAGTGAATGGCACCTCAAGAGGAAGAGAAAAATCTCAGAAACTGTTGATACTCTTCCGAGAGCATCGACAACGAGACCATGACCGAGACCATTTGCCAGCAGAGACACTTCAACACCCACCTGAGGCTAGTAATTTGTCTACTGCTCCTCCGGAAGTGAAACCACTATGCAAGTCAGTATCTAGAAGAAAGGTGGGGAAAGCTTTTAGCTTTCTCTGTAAAAGCAAGAGCTATTCCGTTTACCAGTGTTAA 2310 0.4173 MMDVAELEENLFAASDAKLHGGMCEQLSAIYCKILSIFPSLEEARPRSKSGIQALCSLHVALEKSKSVLRHCSDCSKLYLAITGSSVLLKFEKAKCALEGSLKLVKDIVPQSIGCQIDEIVKELASMVFALDPSEKQIGDDLIALLQQGIQFNDSSDSGELEYFHQAATSLGIISSRSALTERRALKKLIERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDSDSQGSQPCSPTVQRYQEDSVPSGNCQTFNRQLSKLSSFNLKATSRKSGQTNLPPNELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQELSHLSLTPNYCVKGLVASWCQQNGVPIPKGPPQSLDFNYWGLALSDSESTNSRSVNSVSSCKLNGVEVVSVEESAISEKTETNATESLSTEEEDTTHYLSYLKVLAEGSDWKKKCEVVERLRQLLRDDEEARIFMGDNGFVEALLKFLQSAVHEGLLMAQESGAMALFNLAVNNHRNKETMISAGVLSLLEEMISNSSSYGCATALYLNLSCLEDAKPMIGSSQAVQFLIQILQTNTDVQCKLDSLHALYNLSTVPSSIPNLLSSGIINTLQSVLVGQGGSLWTEKCIAVLINLAVSQVGREEIMSAPGLISALASILDTSELHEQEQAATCLLILCNKSDKCIEMVLQEGVIPALVSISVNGTSRGREKSQKLLILFREHRQRDHDRDHLPAETLQHPPEASNLSTAPPEVKPLCKSVSRRKVGKAFSFLCKSKSYSVYQC* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0033 769 Gene3D - 410 710 IPR011989 -
Lan15g0033 769 MobiDBLite consensus disorder prediction 224 249 - -
Lan15g0033 769 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Lan15g0033 769 SUPERFAMILY ARM repeat 430 709 IPR016024 -
Lan15g0033 769 SMART arm_5 455 499 IPR000225 GO:0005515
Lan15g0033 769 SMART arm_5 540 581 IPR000225 GO:0005515
Lan15g0033 769 SMART arm_5 500 539 IPR000225 GO:0005515
Lan15g0033 769 MobiDBLite consensus disorder prediction 712 737 - -
Lan15g0033 769 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Lan15g0033 769 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 761 - -
Lan15g0033 769 CDD RING-Ubox_PUB 284 326 IPR045210 -
Lan15g0033 769 SUPERFAMILY RING/U-box 280 355 - -
Lan15g0033 769 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Lan15g0033 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Lan15g0033 769 MobiDBLite consensus disorder prediction 225 249 - -
Lan15g0033 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Lan15g0033 769 PANTHER U BOX DOMAIN-CONTAINING 2 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0033 Lan-Chr15 208205 212721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0033 2 768 U-box Gene Family AT1G24330 64.910 0.0 991
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0033 15 208205 212721 Lan3g1434 3 25931192 25935617 LSH