Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0025 ATGGAGTGGAATTCAAAATCATTGGGGCAATGGGACTGGGAGGAGAACTTATTCTTTTTCAATGGAAAAGCTTCAGAAAATCCTAAGTTACAATCAACCACAAATTGGAGTTCTGAAGCAGATAAAGAAATCAATGTTGGGCTATTGTATCCATCAGGGGTTAGTGTTTGTTCTGAGTCTGAACTAATACATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCATCAATTCATCGTCAAACGAGGATAGCAAAATATCAATGTTCACATTGGAAGGTTCTCAACATGATGATTCAACTGGTAAGCAAAAATTCTCCAAAGAAGAGCCAGTTGAAAATTCACCAGCACAAGAACCCTCTTCTGTCTCTGGTGAACCATTCTTCACTCTAAAGCTTGGTAAAAGGTTGTACCTTGAGGATGTTTCCACGGGAAGTGATTCCAAGAAACCGTCTTCGAGTGCTGGAAAGAAATGTAAATCCAATGGTCAGAACTTGCAACATCCAAGCTGCCAGGTTGAAGGCTGTGGCCTTGATCTCTCATCTGCGAAGGGTTACCATCGCAACCATAGAGTTTGTGAAAATCATTCGAAATCCCCTAAGGTGATAATATCTGGGTCAGAATGCCGATTTTGCCAGCAGTGTAGCAGGTTCCATGGTCTGTCAGAATTTGATGATAAAAAGAGAAGCTGTAGACGACGTCTTTCAGATCATAATGCTAGGCGCCGCAAACCACATCCTGATGCAGTCCGATTAAACAAACTGGCTTTGTCTTTATCACCCTATGATGGGAGGCAACTAATGAGCCCATTTGCATATTCAAGGACTGCTTCAAATTTAGCATGCCAAGACATACACAGCAGAAAGTTCCCTTTTCACACAAAAGATTTTCTCATGAAGCCTGAAAAAGCCTTCAATAAGATACCAAATGCTGTCACCATGATTTCTGATAATTCCAGTGGCCTTCTTACATCCAAAGGCATAGCAACCAAGAGTATTATTGCAGATAAAATACATGTTGCAGGTATAGAATATCCAATAACCTCTTCTGATCTGAATGGTACACAAGATCTTAACCGTGCTCTCTCTCTTCTGTCAAACAACTCATCATGGGGTGCTGCATATGAATCCAAGTCCTTCTCCATAGAGTACTCCAATAGGACAACCAGTACCACTCATCAGCCCATAACAACACATGCAGCAATGTCTCATCATATCTTACCTTTTGCTTCATCAGAGTATTGGAACACTAATCAGCAACCAGCAAATTCCGGCATCTGTATCCCCTCATACTCAGATTCTGATAATAACAATAGCTTTAAAGAGTTTCAGCTGTGGTACACACCCTATGAATCTGGTTTTCCTTGCAACCAGCTGGATTAA 1380 0.4109 MEWNSKSLGQWDWEENLFFFNGKASENPKLQSTTNWSSEADKEINVGLLYPSGVSVCSESELIHASSSRSSKSASINSSSNEDSKISMFTLEGSQHDDSTGKQKFSKEEPVENSPAQEPSSVSGEPFFTLKLGKRLYLEDVSTGSDSKKPSSSAGKKCKSNGQNLQHPSCQVEGCGLDLSSAKGYHRNHRVCENHSKSPKVIISGSECRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPHPDAVRLNKLALSLSPYDGRQLMSPFAYSRTASNLACQDIHSRKFPFHTKDFLMKPEKAFNKIPNAVTMISDNSSGLLTSKGIATKSIIADKIHVAGIEYPITSSDLNGTQDLNRALSLLSNNSSWGAAYESKSFSIEYSNRTTSTTHQPITTHAAMSHHILPFASSEYWNTNQQPANSGICIPSYSDSDNNNSFKEFQLWYTPYESGFPCNQLD* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0025 459 MobiDBLite consensus disorder prediction 141 166 - -
Lan15g0025 459 MobiDBLite consensus disorder prediction 97 111 - -
Lan15g0025 459 Pfam SBP domain 170 243 IPR004333 GO:0003677
Lan15g0025 459 MobiDBLite consensus disorder prediction 92 125 - -
Lan15g0025 459 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 458 IPR044817 GO:0003677
Lan15g0025 459 SUPERFAMILY SBT domain 168 249 IPR036893 GO:0003677|GO:0005634
Lan15g0025 459 MobiDBLite consensus disorder prediction 144 166 - -
Lan15g0025 459 Gene3D - 160 231 IPR036893 GO:0003677|GO:0005634
Lan15g0025 459 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 22 458 - -
Lan15g0025 459 ProSiteProfiles Zinc finger SBP-type profile. 167 244 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0025 Lan-Chr15 168647 174511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0025 1 424 SBP-box Gene Family AT5G43270 37.557 7.09e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan15g0025 SBP 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0025 - - lang:109328770 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0025 15 168647 174511 Lan14g0228 14 2570069 2576141 LSH
Lan15g0025 15 168647 174511 Lan3g1427 3 25881741 25884696 LSH