Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0006 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGATAATGCTAACAATTCAGTTCCTCCTTCACGACCGGCTTATGTTCCTCCACATCTTAGGAACCGTCCACCCCTATCAGCTGAATCCCATGCTCTTCCTCATCCTGCCCATAATGGTCCCTCTTCGGCTTCGGCTTCCGCTTCCGCTTCCGTTGCTGGTGCTGGTAGGTGGTCCTCTCCAAGGAATGAGTACCGTACCCAACCTATTAGTAGTGGCCATACAAACGGATGGGGTAACAAAAGTGGCGGATGGGATCGTGGGAGGGACCGTGAAGTCAACCCCTTTGCAGAACAGGATGATTCTGAACCAGTATTCACTGAGCAGGAGAATACCGGAATAAATTTTGATGCATATGAAGACATCCCTATTGAGACCACTGGTGAAAATGTTCCTTCACCCGTGAACACATTTGCAGAAATTGACTTGGGTGAAGCGCTCAATGAGAATATAAGAAGGTGCAAATATGTGAGGCCAACACCTGTTCAACGCAATGCCATACCAATATCACTTGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACGGCTGCATTTTGTTTCCCGATTATCAGTGGAATTATGCGGGGACAGCCAGTGCAGAGGCCACCTCACGGGGTGCGTACTGTATACCCAGTTGCCCTTGTTCTCTCACCAACTAGGGAGCTCTCAATGCAAATACATGAAGAAGCTAGGAAGTTTTCATACCAAACAGGGGTTCGGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCAGCAGCTACGGGATCTTGAGAGAGGGGTGGACATTCTTGTAGCAACTCCAGGTAGACTGGTAGATTTGCTAGAGAGAGCTAGAGTTTCACTACAAATGATCAGATATCTGGCCTTAGATGAGGCAGACAGGATGTTGGATATGGGTTTTGAGCCTCAGATAAGGAAAATTGTGCAACAGATGGACATGCCTCCACCAGGTGTCAGACAGACTATGCTCTTTAGTGCCACGTTTCCTAGAGAGATACAGAGGCTAGCATCTGATTTCCTTTCAAATTATATATTTCTAGCTGTTGGAAGAGTGGGCTCGAGTACCGATTTAATTGACCAAAGAGTTGAGTATGTTCAGGAATCTGACAAGAGAAGTCATCTCATGGACCTTCTTCATGCCCAAAGGACAAATGGTGCCCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCACTGGAGCACTGGCTTTGTCTTAATGGTTTTCCAGCAACTACTATTCATGGTGACAGGACACAACAGGAAAGAGAATTCGCACTGAAGTCATTTAAAAGTGGCAACACCCCTATATTAGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCTCATGTGGTTAATTTTGACCTTCCCAATGATATTGATGATTATGTGCACCGTATTGGAAGGACAGGGCGTGCAGGAAAGAAGGGCCTCGCCACTGCATTTTTTAATGACAATAATGTAAACTTAGCCAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGATTTTGGGGTTTGCTGCTCGGTCTTCCTTCAGCGGAGGAAGGAACCGCCGATCAGGAGGAGGAAGCCGTTTTGGAAGTCGTGACTTTCGAAGAGAAGGGTCTTTTAGTAGGGGTGGCAGTTCTGATTATCACAATGCAGGAAACAATGGTGGTGGTTATGGGACATCTGGTGGGTATGCCGGAGGATATGGTAGTCTTGGGGTAACTAGTGCATGGGACTGA 1836 0.4695 MRTSWADLAANSAADNANNSVPPSRPAYVPPHLRNRPPLSAESHALPHPAHNGPSSASASASASVAGAGRWSSPRNEYRTQPISSGHTNGWGNKSGGWDRGRDREVNPFAEQDDSEPVFTEQENTGINFDAYEDIPIETTGENVPSPVNTFAEIDLGEALNENIRRCKYVRPTPVQRNAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPHGVRTVYPVALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRTNGAQGKQALTLVFVETKKGADALEHWLCLNGFPATTIHGDRTQQEREFALKSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNVNLARALADLMQEANQEVPAWILGFAARSSFSGGRNRRSGGGSRFGSRDFRREGSFSRGGSSDYHNAGNNGGGYGTSGGYAGGYGSLGVTSAWD* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0006 611 MobiDBLite consensus disorder prediction 97 111 - -
Lan15g0006 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Lan15g0006 611 MobiDBLite consensus disorder prediction 53 92 - -
Lan15g0006 611 MobiDBLite consensus disorder prediction 559 575 - -
Lan15g0006 611 Pfam DEAD/DEAH box helicase 173 354 IPR011545 GO:0003676|GO:0005524
Lan15g0006 611 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 55 581 - -
Lan15g0006 611 MobiDBLite consensus disorder prediction 548 584 - -
Lan15g0006 611 CDD DEADc_DDX3_DDX4 150 371 IPR044763 GO:0003724|GO:0005524
Lan15g0006 611 SMART helicmild6 423 504 IPR001650 -
Lan15g0006 611 MobiDBLite consensus disorder prediction 1 23 - -
Lan15g0006 611 SMART ultradead3 168 380 IPR014001 -
Lan15g0006 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 523 IPR027417 -
Lan15g0006 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 365 IPR014001 -
Lan15g0006 611 Pfam Helicase conserved C-terminal domain 389 504 IPR001650 -
Lan15g0006 611 MobiDBLite consensus disorder prediction 1 118 - -
Lan15g0006 611 CDD SF2_C_DEAD 377 513 - -
Lan15g0006 611 Gene3D - 368 546 IPR027417 -
Lan15g0006 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 376 543 IPR001650 -
Lan15g0006 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 581 - -
Lan15g0006 611 Gene3D - 105 367 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0006 Lan-Chr15 44886 49859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0006 147 536 Eukaryotic Initiation Factors Gene Family AT3G19760 31.458 3.56e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0006 K11594 - gmx:100795756 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0006 15 44886 49859 Lan14g0242 14 2666095 2671049 LSH