Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0897 ATGAGTTGTGGTTGTTCAATAAACTTATTGATTTGTTTGTGTTCCCTGATGTTATTGATGGTGCAGAATTTGGATAAGGGGCTTCACTACACACAATTATATGAACTTTGTTCAAATTTTGGAAATATTATTTCTTGCAAGATTGCAAAAGAACCTTCTGGCAAGTCTAAAGGCTATGGTTATGTACAATTTGAGAATGAAGAATCTGCACAAAATACAATTGACAACTTAAATAGGAAGCGGATTAAAGGTAAACAGGTTTCCGTAAGTCATTTCGTGCCAAAGGAGGATAGAGAGACTGTATTCAGTATCGACACCTCAAAAGTTACTGAGTTGTATGTAAAAAACCTATCGAAGTGGCTGACAGAGGTTGAGTTGGAGAGTGTTTTTGGCGAATATGGCACCATTGCTAATGCTATAGTGATGAGAAATGCAGATGGTAGTTCAAAGTGTTTTGGTTTTGTCCATTTTGAAAATCCAGATAGTGCAGCTAAAGCTCTCAAGGCACTTAATGGAATGAAATTTGATGGTAAGAAGTTGTATGTCAGAAAAGCTATGGACAAATCTGAAAGAGAGCTTGAAATGAAGAATGCTTTTGACCGAGTTATGCAGGAAATTGCTGAGAAAAAAGACTATGTTAACTTGTATATTAAGAACTTGCCATATAGTATTACGGATGAAAAACTTAAGGAAATGTTCTCACAGTTTGGCAGAATAACTTCATACAGGGTTTTACGAGATCACCATGGAATTAGTAGAGGATATGGATTTGTTGAATTTTCAACTCCTGAGGAAGCAAATCAAGTTGTAAGTATTTGTGCGATGAATGGTAAAATCATTTCTGGAAGACGTCTTGGTGTTTCCCTTGCACAGAAGAAAGAGCTGGGAAGATCAAACTTACAGGCACAATTTTCACAAATGAGACCTGTTACGATGGCTCCTCCTGCTTCTGAAGCACCTCATATTCCACTCAACCCTCCCAGGGCTCCTGCTGCAGAACCACAATTTTTGTCTGGACTAGCAACTCCTGGCTATATTCCTGAAGTTGGATTTGGTTACCAATTGACTGAAATGAGAACAGGTGGTGCTCCAGTTCCAAACTTCTTTATTCCACTGGTTCAGCCGGGTCCACATGACCCACTGTCAGGTGGAGGGCAAGGATCAGACTACTTTTGCTTTGTCTTTCAGGTGCTTAGTAGGAGTCTTGACAATTGGCTTTCTTCTATTCACAACACACAAGATGCTCCATGGCCAGCGGTAGCTGGAGGAATGCCCCACGTCCCTTATGACATGGGTGGTCTGCCCATCGGGGATGCCTTGGGACAGCCAATGGCCACTCAGTCCATGTCCACAGCACTTGCAAATGCTTCTGCTGAACGGCAAAGGGCTATGCTTGGTCAAGCTTTATACCCACTAGTACGTAATTTGGAACCTGATTCAGCAGAGAAGATTACTGGTATGATTTTGGAGATGGACGAGCCTGAGGTATTATTACATCTGATTGTGTCTCCAGATGCTCTCAAAGAAAAAGTTGCTGAGGCCATGGATTTGTTGCAGTGTCATGCCGCTCCTGAGGATCAACTGGCTTCACTCCATATGAATTGA 1605 0.4137 MSCGCSINLLICLCSLMLLMVQNLDKGLHYTQLYELCSNFGNIISCKIAKEPSGKSKGYGYVQFENEESAQNTIDNLNRKRIKGKQVSVSHFVPKEDRETVFSIDTSKVTELYVKNLSKWLTEVELESVFGEYGTIANAIVMRNADGSSKCFGFVHFENPDSAAKALKALNGMKFDGKKLYVRKAMDKSERELEMKNAFDRVMQEIAEKKDYVNLYIKNLPYSITDEKLKEMFSQFGRITSYRVLRDHHGISRGYGFVEFSTPEEANQVVSICAMNGKIISGRRLGVSLAQKKELGRSNLQAQFSQMRPVTMAPPASEAPHIPLNPPRAPAAEPQFLSGLATPGYIPEVGFGYQLTEMRTGGAPVPNFFIPLVQPGPHDPLSGGGQGSDYFCFVFQVLSRSLDNWLSSIHNTQDAPWPAVAGGMPHVPYDMGGLPIGDALGQPMATQSMSTALANASAERQRAMLGQALYPLVRNLEPDSAEKITGMILEMDEPEVLLHLIVSPDALKEKVAEAMDLLQCHAAPEDQLASLHMN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0897 534 PRINTS Paraneoplastic encephalomyelitis antigen family signature 110 125 IPR002343 GO:0003723|GO:1990904
Lan14g0897 534 PRINTS Paraneoplastic encephalomyelitis antigen family signature 218 233 IPR002343 GO:0003723|GO:1990904
Lan14g0897 534 PRINTS Paraneoplastic encephalomyelitis antigen family signature 233 245 IPR002343 GO:0003723|GO:1990904
Lan14g0897 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Lan14g0897 534 Gene3D - 198 309 IPR012677 -
Lan14g0897 534 SMART poly_2 457 521 IPR002004 GO:0003723
Lan14g0897 534 Pfam Poly-adenylate binding protein, unique domain 453 518 IPR002004 GO:0003723
Lan14g0897 534 PANTHER POLYADENYLATE-BINDING PROTEIN 19 524 - -
Lan14g0897 534 SUPERFAMILY PABC (PABP) domain 432 528 IPR036053 GO:0003723
Lan14g0897 534 SUPERFAMILY RNA-binding domain, RBD 210 308 IPR035979 GO:0003676
Lan14g0897 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 87 IPR000504 GO:0003723
Lan14g0897 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 285 IPR000504 GO:0003723
Lan14g0897 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 180 IPR000504 GO:0003723
Lan14g0897 534 Gene3D - 18 105 IPR012677 -
Lan14g0897 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Lan14g0897 534 SMART rrm1_1 18 90 IPR000504 GO:0003723
Lan14g0897 534 SMART rrm1_1 214 288 IPR000504 GO:0003723
Lan14g0897 534 SMART rrm1_1 111 183 IPR000504 GO:0003723
Lan14g0897 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 292 IPR000504 GO:0003723
Lan14g0897 534 Gene3D - 106 197 IPR012677 -
Lan14g0897 534 Gene3D - 442 523 - -
Lan14g0897 534 PANTHER RNA BINDING PROTEIN 19 524 - -
Lan14g0897 534 SUPERFAMILY RNA-binding domain, RBD 104 196 IPR035979 GO:0003676
Lan14g0897 534 SUPERFAMILY RNA-binding domain, RBD 19 99 IPR035979 GO:0003676
Lan14g0897 534 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 445 523 IPR002004 GO:0003723
Lan14g0897 534 SMART rrm2_1 18 90 IPR003954 GO:0003676
Lan14g0897 534 SMART rrm2_1 111 183 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0897 Lan-Chr14 15563306 15567095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0897 19 534 Eukaryotic Initiation Factors Gene Family AT4G34110 45.229 1.04e-140 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0897 K13126 - gmx:100784442 525.398