Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0868 ATGAATTTCAACATGGATTCTGATAAAGCGAAGCTGTTCATTGGTGGGATTTCTCGGGAAACTACCCATGATATTCTGAGAGATCACTTCTCTGTATACGGCACCGTTTTGGATTCCACGATTTCAGTAGACCGCATCACTCGTTACCCTAGAGGTTTTGGCTTTGTTACCTTCTCTGATCTCTCTGCAGCTGAAAAAGCTCTTCAAGACACCCATGTTATTCTTGGAAGAACGGTAGAAGTGAAAAAAGCAATACCGAGAAGTGAACAGCAACACCAAAACCAACTATATAGTAGAGGGGTGAGTAACTATAGTAGTAGTAAGAATGACTGTAGCAGCGACCACATTAGGACTAAAAAGATATTTGTAGGAGGTTTATCTGCTGGTATATCTGAGGAAGAGTTTAAGAGATACTTTGAGAGGTTTGGTCGGATAACGGATGTAGTGGTGATGCAGGACAGTGTAACTCACCGGCCTAGGGGGTTTGGGTTCATCACTTTTGATTCAGAAGAATCTGTGGAACATGTTGTGGCGGAAAGTTTTCATGACTTGAGTGGTAGGCAGGTAGAGGTCAAAAGAGCGGTGCCAAAAGAGGGGAACAATGTTGGTGATGGTTATAACAAATTTAGATATAATAAGAGTGAAAGAGGAACCCCTCAAAGTTATCCTCCTCATGGTCCTAGGTACATGTCACCTGGCTTTGCACCTATGCCTTATTATGGCAGTGGTGGGGTTTATGCTTATGGTTCAAATCCATATGGTTATTGCTACACTACGGGTGGGTATGGGGGGGATGTATATGCAATTCCGTCTGATGCTTCTAGGAACTTCTGGTATGGCCCCATGATAGCTGGTCCTCAGCCATGTCAGATTCCTTATGCCAATGCCTCACCAAATGTTGTGTATGCGGGTGGTAGGGTTGGAATAGTAGAGTGTGGTCCTGGAACCAGGGGGTACAATGGCCTTCTTGGTTCTGCAACAAACTGGAAATATGATCAATGTTTTACTGGCAATGGATTTGTTCCTGATTATGTGATACCACTTCAAAGTGAGAAGCACAGTGTTGATCCTTCAAGGTTGAAGGGAAACAAGTGA 1095 0.4356 MNFNMDSDKAKLFIGGISRETTHDILRDHFSVYGTVLDSTISVDRITRYPRGFGFVTFSDLSAAEKALQDTHVILGRTVEVKKAIPRSEQQHQNQLYSRGVSNYSSSKNDCSSDHIRTKKIFVGGLSAGISEEEFKRYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVEHVVAESFHDLSGRQVEVKRAVPKEGNNVGDGYNKFRYNKSERGTPQSYPPHGPRYMSPGFAPMPYYGSGGVYAYGSNPYGYCYTTGGYGGDVYAIPSDASRNFWYGPMIAGPQPCQIPYANASPNVVYAGGRVGIVECGPGTRGYNGLLGSATNWKYDQCFTGNGFVPDYVIPLQSEKHSVDPSRLKGNK* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0868 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Lan14g0868 364 MobiDBLite consensus disorder prediction 88 109 - -
Lan14g0868 364 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 337 - -
Lan14g0868 364 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 337 - -
Lan14g0868 364 Gene3D - 116 204 IPR012677 -
Lan14g0868 364 MobiDBLite consensus disorder prediction 86 109 - -
Lan14g0868 364 SUPERFAMILY RNA-binding domain, RBD 6 106 IPR035979 GO:0003676
Lan14g0868 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Lan14g0868 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 178 IPR000504 GO:0003723
Lan14g0868 364 MobiDBLite consensus disorder prediction 205 227 - -
Lan14g0868 364 Gene3D - 3 113 IPR012677 -
Lan14g0868 364 SMART rrm1_1 11 82 IPR000504 GO:0003723
Lan14g0868 364 SMART rrm1_1 120 192 IPR000504 GO:0003723
Lan14g0868 364 SUPERFAMILY RNA-binding domain, RBD 113 216 IPR035979 GO:0003676
Lan14g0868 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0868 Lan-Chr14 15345783 15347472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0868 12 270 Eukaryotic Initiation Factors Gene Family AT4G34110 25.188 8.01e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0868 K14411 - gmx:100816822 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0868 14 15345783 15347472 Lan14g0868 14 15345783 15347472 ECH
Lan15g1123 15 20032286 20033890 Lan14g0868 14 15345783 15347472 LSH
Lan14g0868 14 15345783 15347472 Lan3g1167 3 23930867 23932489 LSH