Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0825 ATGTACATGTTAAATTTTCTTAACCTACTATACCAACTAGGGGACCAGGAATTGAATGTGTACTTTACAATGGAAACACTCATGAGTGAAGAGCCTTATCTCTGTGATAACACTAGAGAGCTTCCTCCAATTCCAAACACACTATTTCAGAATCCACATGAAAATAAGCAGCATCATCAATATCTTGAGGAACAAGAAGCAAGAAAAGAGACAAAAAGAAATGCCTTATTATTGGATCTGAATGGTCCTTGTGATGATTCTTCTCTTCAGTGTAGTCCACAGCTCAACCTTATAACATGTTTGGACATGGATTCAGCTAAGACTTCATCAGAAGAAAACCCTCCTAGTGTTGATGCTGCTATAGAGCCTAGAGTATTCTCTTGCAACTATTGCAAGAGAAAGTTCTATAGTTCACAAGCTCTTGGAGGACACCAAAATGCTCATAAAAGAGAGAGGTCAGTAGCAAGGAGAAGTCAAAGGTTAGGAACACACTTAATGGCCTCAGCAGCAGCATTTGGGATACCTTATCTTCATGATATTGCATCTTTACCCCTCCATGGTAATAAACCATTTGGAATTCAGGCTCACTCCATGATTCATAAGCCTTCTCATTTTTCATCTAATGTTATTGGGTTTGGAAGCAGTTATGGACAACAACAAAATGGTTGGTCAAGATCAAGACCCCTTATTAATCAACAACCTGGAATAGGTAAATTTGAAGTGGTAAATGTTAGAAGTTCCATGCTCAATTCTGCAGCCAATGAAGAAACAAGTGGATATGTTGTTAGTGGAACTTGTTTGAAGACTAGTCAAGATGATATGAAGCTTCTTGATTTATCCTTAAAGCTCTAA 852 0.3791 MYMLNFLNLLYQLGDQELNVYFTMETLMSEEPYLCDNTRELPPIPNTLFQNPHENKQHHQYLEEQEARKETKRNALLLDLNGPCDDSSLQCSPQLNLITCLDMDSAKTSSEENPPSVDAAIEPRVFSCNYCKRKFYSSQALGGHQNAHKRERSVARRSQRLGTHLMASAAAFGIPYLHDIASLPLHGNKPFGIQAHSMIHKPSHFSSNVIGFGSSYGQQQNGWSRSRPLINQQPGIGKFEVVNVRSSMLNSAANEETSGYVVSGTCLKTSQDDMKLLDLSLKL* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0825 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 153 IPR013087 -
Lan14g0825 283 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Lan14g0825 283 SUPERFAMILY beta-beta-alpha zinc fingers 123 154 IPR036236 -
Lan14g0825 283 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 37 283 - -
Lan14g0825 283 Gene3D Classic Zinc Finger 119 171 - -
Lan14g0825 283 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 37 283 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0825 Lan-Chr14 15044137 15045231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0825 92 283 C2H2 Transcription Factor Family AT5G25160 42.478 7.03e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan14g0825 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0825 - - lang:109326246 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1054 15 19568309 19569819 Lan14g0825 14 15044137 15045231 LSH
Lan14g0825 14 15044137 15045231 Lan3g1102 3 23366425 23367582 LSH
Lan3g1720 3 29720609 29721349 Lan14g0825 14 15044137 15045231 PCT
Lan14g0825 14 15044137 15045231 Lan3g1720 3 29720609 29721349 PCT