Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0790 ATGGCGCGCCCAGTCTCAGGGCACTTGTGTTCCACCACTCACCACCATATTGTAGACATTACACCACCGAGTTATGAAGCCTCCACTTCTACGTCCAACCAGGATGCTAATTTTGATGTACCTAATAATAGTGCTGCTACAGCGCCTGTTTCTCAGCTATCAGATGAATCGAGTTCGAGGAATTCTTCATTATTGAGACGAGGTGATAGCAGTCGGCGTTTGAGGAGTCCATTGAATTCAGGGTTTTGGATATCTATTGAGCTAGTCGTCACAATATGCCAGATTGTTGCTTCTGTTGTTGTTTTGTCCCTGTCGAGGCATGAGCACCCGAGTACCCCTTTGTTTGAGTGGATTGTGGGTTATGCTTCTGGATGTGCTGCTACCCTACCTCTACTTTATTGGCGCTATTATCATGGTAACCGACTCCAACAGCAAGATACATCTCAATCGCACCAGAGTTCTCCTAGCATTAGTGGTCCTTCAGGAAGAACACTTCGTTCTACTTCCAGAACGAATGGAGGAGAAGGTATTCAGGTTGCTGCTGCATCCCCTAGAAGCAATCAAGCTTCATGGTTGATGAATGCAAGATTGAAGTTACTTGTGGAATACATCAAAATGGCCATGAATTGCTTTTTTGCTGTATGGTTCGTTGTCGGAAATATATGGATTTTCGGAGGACATTCATCTGCCAACGAAGCTCCTAACTTGTATAGGTTGTGTATAGTGTTTCTTACTTTTAGCTGTATCGGTTATGCTATGCCCTTCATTTTTTGTGCAACAATCTGCTGCTGTCTGCCTTGTATAATATCCATCCTTGGGGTTAGAGAGGATCTGATACAAACACAAGGTGCAACTTCTGAATCCATTAATGCTCTGCCGACTTACAGCTTCAAGATGAAGACAAATAATAGCAGGGATGAAAACAACTCGGTTGCTGATGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAGGAACGTTTGGTCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGTGAAGTATGAAAATAACGACGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTTCACAAAGACTGCATAGACAAGTGGTTGAAGATAAGTGCATTATGCCCTCTCTGTAAGTGTGGGGTTGGTGAGAAAGTTGCAGGATCAGTCTCTGGGGAAGGTTCGAGCCAACAACATGGTTGA 1194 0.4422 MARPVSGHLCSTTHHHIVDITPPSYEASTSTSNQDANFDVPNNSAATAPVSQLSDESSSRNSSLLRRGDSSRRLRSPLNSGFWISIELVVTICQIVASVVVLSLSRHEHPSTPLFEWIVGYASGCAATLPLLYWRYYHGNRLQQQDTSQSHQSSPSISGPSGRTLRSTSRTNGGEGIQVAAASPRSNQASWLMNARLKLLVEYIKMAMNCFFAVWFVVGNIWIFGGHSSANEAPNLYRLCIVFLTFSCIGYAMPFIFCATICCCLPCIISILGVREDLIQTQGATSESINALPTYSFKMKTNNSRDENNSVADEGGIVAAGTEKERLVSGEDAVCCICLVKYENNDELRELPCSHLFHKDCIDKWLKISALCPLCKCGVGEKVAGSVSGEGSSQQHG* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0790 397 Pfam Ring finger domain 335 376 IPR001841 -
Lan14g0790 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 384 IPR013083 -
Lan14g0790 397 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 43 397 - -
Lan14g0790 397 MobiDBLite consensus disorder prediction 23 65 - -
Lan14g0790 397 MobiDBLite consensus disorder prediction 22 72 - -
Lan14g0790 397 ProSiteProfiles Zinc finger RING-type profile. 335 376 IPR001841 -
Lan14g0790 397 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 43 397 - -
Lan14g0790 397 SUPERFAMILY RING/U-box 327 382 - -
Lan14g0790 397 SMART ring_2 335 375 IPR001841 -
Lan14g0790 397 MobiDBLite consensus disorder prediction 145 172 - -
Lan14g0790 397 SMART ringv_2 334 376 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0790 Lan-Chr14 14792541 14797126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0790 66 386 C3H Transcription Factor Family AT1G80400 58.824 1.58e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0790 - - gmx:100778728 512.301