Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0766 ATGCAGCAAGAAGCACTAATGCAACAAGCTTTGCTCCAACAACAACAACAACAACAACAACATATGTATCACCCTGGCATGCTTGCTGCTGCTGCTTCTATGTCTCAGATGGATCCTGTTCCAAGTGGGAATCTGCCTCCTGGTTTTGACACTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTAATGTAAATGTCACGGATCAGCTCCTTGCAGAAGTTTTTCAGAGTGCCGGTCCTCTTGCTGGATGCAAGCTCATAAAAAAAGAAAAGTCCTCTTATGGTTTCGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCTATAATGACGCTGCATGGACGGCAGCTATATGGCCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACTTCAGGGCACTTCAATGTATTTGTCGGTGATTTGAGTGCAGAGGTCACCGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGACGCAAGGGTTATGTGGGATAACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTTCGTGATCATCAGGATGCCCAAAGAGCCATCAATGATATGTCAGGTAAATGGCTGGGAAATAGGCAAATACGATGCAATTGGGCTACTAAGGGTGCTGGTGCCAGCTCCGGCGAAGAGAAGAACAATGAGAATCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAATAATGAGGATGCTCCTGAAAAGAATCCTGCATACACCACAGTTTATGTCGGCAACCTTCCCCATGACGTAACTCAAGCTGAACTCCATTGTCAGTTTCATGCACTGGGTGCTGGGGTTATTGAGGAGGTCCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGGTACAACACTCATGATGAAGCAGCATTGGCCATTCTGATCGGTAATGGAAGAATAGTTCGTGGGAAGAGTATGAAGTGCTCATGGGGTAGCAAGCCAACTCCTCCCGGGACAGCTTCAAATCCCTTACCTTCTCCTGCTCCTGCTCAACCGTATCAAATACTCCCGGCTGCTGGGATGAACCAAGGCTATTCGGCAGCCGAGTTGTTGGCTTATCAGCGCCAACTGGCATTGAGTCAAGCTGCTGTGTCTGGTCTTTCAGGTCAAGCCCTTCTGCAAATGACTGGACAACATGGCTTAGCTCCTGCTTCTATGGGCATAAACTCTGGGGTATCTCAAGCCATGTATGATGGATATACTGGTAATTCATCAAGGCAGCATCTTATGTACTATCATTGA 1311 0.4584 MQQEALMQQALLQQQQQQQQHMYHPGMLAAAASMSQMDPVPSGNLPPGFDTSACRSVYVGNINVNVTDQLLAEVFQSAGPLAGCKLIKKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSAEVTDATLFACFSVYPSCSDARVMWDNKTGRSKGYGFVSFRDHQDAQRAINDMSGKWLGNRQIRCNWATKGAGASSGEEKNNENQNAVVLTNGSSDGGQDNNNEDAPEKNPAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHDEAALAILIGNGRIVRGKSMKCSWGSKPTPPGTASNPLPSPAPAQPYQILPAAGMNQGYSAAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGVSQAMYDGYTGNSSRQHLMYYH* 437
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0766 436 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 421 - -
Lan14g0766 436 MobiDBLite consensus disorder prediction 236 259 - -
Lan14g0766 436 SUPERFAMILY RNA-binding domain, RBD 252 345 IPR035979 GO:0003676
Lan14g0766 436 CDD RRM2_PUB1 141 215 - -
Lan14g0766 436 SMART rrm1_1 56 125 IPR000504 GO:0003723
Lan14g0766 436 SMART rrm1_1 263 332 IPR000504 GO:0003723
Lan14g0766 436 SMART rrm1_1 141 214 IPR000504 GO:0003723
Lan14g0766 436 Gene3D - 1 137 IPR012677 -
Lan14g0766 436 Gene3D - 138 240 IPR012677 -
Lan14g0766 436 SUPERFAMILY RNA-binding domain, RBD 38 133 IPR035979 GO:0003676
Lan14g0766 436 SUPERFAMILY RNA-binding domain, RBD 134 232 IPR035979 GO:0003676
Lan14g0766 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Lan14g0766 436 CDD RRM3_TIA1_like 262 336 - -
Lan14g0766 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Lan14g0766 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Lan14g0766 436 Gene3D - 241 340 IPR012677 -
Lan14g0766 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Lan14g0766 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 329 IPR000504 GO:0003723
Lan14g0766 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Lan14g0766 436 MobiDBLite consensus disorder prediction 236 257 - -
Lan14g0766 436 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 16 421 - -
Lan14g0766 436 SMART rrm2_1 141 214 IPR003954 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lan14g0766 Lan-Chr14 14570974 14577630 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0766 56 336 Eukaryotic Initiation Factors Gene Family AT2G23350 30.137 5.24e-26 108
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0766 K13201 - gmx:100777108 781.941
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0978 15 19029937 19036727 Lan14g0766 14 14570974 14577630 LSH
Lan14g0766 14 14570974 14577630 Lan3g1477 3 26312702 26319314 LSH