Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan14g0766 | ATGCAGCAAGAAGCACTAATGCAACAAGCTTTGCTCCAACAACAACAACAACAACAACAACATATGTATCACCCTGGCATGCTTGCTGCTGCTGCTTCTATGTCTCAGATGGATCCTGTTCCAAGTGGGAATCTGCCTCCTGGTTTTGACACTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTAATGTAAATGTCACGGATCAGCTCCTTGCAGAAGTTTTTCAGAGTGCCGGTCCTCTTGCTGGATGCAAGCTCATAAAAAAAGAAAAGTCCTCTTATGGTTTCGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCTATAATGACGCTGCATGGACGGCAGCTATATGGCCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACTTCAGGGCACTTCAATGTATTTGTCGGTGATTTGAGTGCAGAGGTCACCGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGACGCAAGGGTTATGTGGGATAACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTTCGTGATCATCAGGATGCCCAAAGAGCCATCAATGATATGTCAGGTAAATGGCTGGGAAATAGGCAAATACGATGCAATTGGGCTACTAAGGGTGCTGGTGCCAGCTCCGGCGAAGAGAAGAACAATGAGAATCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAATAATGAGGATGCTCCTGAAAAGAATCCTGCATACACCACAGTTTATGTCGGCAACCTTCCCCATGACGTAACTCAAGCTGAACTCCATTGTCAGTTTCATGCACTGGGTGCTGGGGTTATTGAGGAGGTCCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGGTACAACACTCATGATGAAGCAGCATTGGCCATTCTGATCGGTAATGGAAGAATAGTTCGTGGGAAGAGTATGAAGTGCTCATGGGGTAGCAAGCCAACTCCTCCCGGGACAGCTTCAAATCCCTTACCTTCTCCTGCTCCTGCTCAACCGTATCAAATACTCCCGGCTGCTGGGATGAACCAAGGCTATTCGGCAGCCGAGTTGTTGGCTTATCAGCGCCAACTGGCATTGAGTCAAGCTGCTGTGTCTGGTCTTTCAGGTCAAGCCCTTCTGCAAATGACTGGACAACATGGCTTAGCTCCTGCTTCTATGGGCATAAACTCTGGGGTATCTCAAGCCATGTATGATGGATATACTGGTAATTCATCAAGGCAGCATCTTATGTACTATCATTGA | 1311 | 0.4584 | MQQEALMQQALLQQQQQQQQHMYHPGMLAAAASMSQMDPVPSGNLPPGFDTSACRSVYVGNINVNVTDQLLAEVFQSAGPLAGCKLIKKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSAEVTDATLFACFSVYPSCSDARVMWDNKTGRSKGYGFVSFRDHQDAQRAINDMSGKWLGNRQIRCNWATKGAGASSGEEKNNENQNAVVLTNGSSDGGQDNNNEDAPEKNPAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHDEAALAILIGNGRIVRGKSMKCSWGSKPTPPGTASNPLPSPAPAQPYQILPAAGMNQGYSAAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGVSQAMYDGYTGNSSRQHLMYYH* | 437 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan14g0766 | 436 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 16 | 421 | - | - | |
Lan14g0766 | 436 | MobiDBLite | consensus disorder prediction | 236 | 259 | - | - | |
Lan14g0766 | 436 | SUPERFAMILY | RNA-binding domain, RBD | 252 | 345 | IPR035979 | GO:0003676 | |
Lan14g0766 | 436 | CDD | RRM2_PUB1 | 141 | 215 | - | - | |
Lan14g0766 | 436 | SMART | rrm1_1 | 56 | 125 | IPR000504 | GO:0003723 | |
Lan14g0766 | 436 | SMART | rrm1_1 | 263 | 332 | IPR000504 | GO:0003723 | |
Lan14g0766 | 436 | SMART | rrm1_1 | 141 | 214 | IPR000504 | GO:0003723 | |
Lan14g0766 | 436 | Gene3D | - | 1 | 137 | IPR012677 | - | |
Lan14g0766 | 436 | Gene3D | - | 138 | 240 | IPR012677 | - | |
Lan14g0766 | 436 | SUPERFAMILY | RNA-binding domain, RBD | 38 | 133 | IPR035979 | GO:0003676 | |
Lan14g0766 | 436 | SUPERFAMILY | RNA-binding domain, RBD | 134 | 232 | IPR035979 | GO:0003676 | |
Lan14g0766 | 436 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | IPR000504 | GO:0003723 | |
Lan14g0766 | 436 | CDD | RRM3_TIA1_like | 262 | 336 | - | - | |
Lan14g0766 | 436 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 336 | IPR000504 | GO:0003723 | |
Lan14g0766 | 436 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | IPR000504 | GO:0003723 | |
Lan14g0766 | 436 | Gene3D | - | 241 | 340 | IPR012677 | - | |
Lan14g0766 | 436 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | IPR000504 | GO:0003723 | |
Lan14g0766 | 436 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 329 | IPR000504 | GO:0003723 | |
Lan14g0766 | 436 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | IPR000504 | GO:0003723 | |
Lan14g0766 | 436 | MobiDBLite | consensus disorder prediction | 236 | 257 | - | - | |
Lan14g0766 | 436 | PANTHER | OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 | 16 | 421 | - | - | |
Lan14g0766 | 436 | SMART | rrm2_1 | 141 | 214 | IPR003954 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan14g0766 | Lan-Chr14 | 14570974 | 14577630 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan14g0766 | 56 | 336 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 30.137 | 5.24e-26 | 108 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan14g0766 | K13201 | - | gmx:100777108 | 781.941 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan15g0978 | 15 | 19029937 | 19036727 | Lan14g0766 | 14 | 14570974 | 14577630 | LSH | |
Lan14g0766 | 14 | 14570974 | 14577630 | Lan3g1477 | 3 | 26312702 | 26319314 | LSH |