Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0742 ATGTTCATGATGTTTCCTTCTCTTGTATCCTACAATGTTGAAGCACAAAATAGCAGTGAACAGAATATGCCAGAATTGCCTCCAACTGTGCATCCAAGCAAGGTGGTTGTAATATCTGTCCTTGCCATAATGTTTGTCATAACATTTCTCTTACTTTTCTATGTAAAGTTCTGTCGAATTAACCCGATTCAAATCTCGAATCCGAATCCTAGTTTTCGATCCCTCAATGGACTAACTAGATCATGGTCTAGTAGACTATCTGGGATTGATAAACTAGTGATTGAAACACTGCCATTCTTCAAGTTTTCTTCCCTCAAAGGTTCCAAAGAAGGCCTAGAGTGCACTGTTTGCTTATCGAAATTCGAGGACACAGAAATTCTCAGACTTCTACCAAAGTGCAAACATGCTTTTCACATGAATTGTATAGACAAGTGGCTTGAAAATCACTCTACCTGCCCTCTTTGTAGGTACAAGGTTGAAGAAGTCGACATCAAGAACTTCACTCATTCATTGAGTTCGAGATTCCTGCGAGTTCCTTCGAACCTAAACGAGGATCCGAATGTTGAAATCTTTGTCCAGAGGGAGCTATCTCATAGATGGTCATCAAGGTTTAACATTGGAAGTGGATTTTGGGACATGGGCAAGAACAAAAAAGAAGAATTTGTCATTGATCAAGAAGGTGGAAGCACTAGTAGTGATGTTAATGTTACTACAAAAACTAAACCTGTGCACAATTTCAATCACAAAATACAAGTATCTGATTTTGTTACAAGAACAAGATGGAGTGATCTTAATTCTTCAGACTTGTTATCATTGAGTTGTGAGATGCTTATTGATGATATTTCTAGCAAGAGATTTTTTCCTTTGAAACCAACCAACACTGAAAAGTTTCAAGCTAGTTCTAATGAAGAAGAAAAATCATTTACATCACTTGATCCTTCTGAGAAAAGGTCCATGTCTGAGATTGCCAATGTTCCAAGGTTTGCAGGAATCAGCAAGCAGAATAGGATCAGAGAATATGAAGCATCTGGTGGAGAAAGAGAGGAAAGGTTATGGAAGATTTGGTTACCAATTGCACAAAGAACAGTGCAATTGTTTGCAAGACAAGAAACAAGTTCAGTTGAATTAGAACACAAACCTTTAGCTTCTATTGTTTGA 1158 0.3765 MFMMFPSLVSYNVEAQNSSEQNMPELPPTVHPSKVVVISVLAIMFVITFLLLFYVKFCRINPIQISNPNPSFRSLNGLTRSWSSRLSGIDKLVIETLPFFKFSSLKGSKEGLECTVCLSKFEDTEILRLLPKCKHAFHMNCIDKWLENHSTCPLCRYKVEEVDIKNFTHSLSSRFLRVPSNLNEDPNVEIFVQRELSHRWSSRFNIGSGFWDMGKNKKEEFVIDQEGGSTSSDVNVTTKTKPVHNFNHKIQVSDFVTRTRWSDLNSSDLLSLSCEMLIDDISSKRFFPLKPTNTEKFQASSNEEEKSFTSLDPSEKRSMSEIANVPRFAGISKQNRIREYEASGGEREERLWKIWLPIAQRTVQLFARQETSSVELEHKPLASIV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0742 385 MobiDBLite consensus disorder prediction 297 319 - -
Lan14g0742 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 293 - -
Lan14g0742 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 292 378 - -
Lan14g0742 385 SMART ring_2 114 155 IPR001841 -
Lan14g0742 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 166 IPR013083 -
Lan14g0742 385 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lan14g0742 385 SUPERFAMILY RING/U-box 93 162 - -
Lan14g0742 385 Pfam Ring finger domain 113 156 IPR001841 -
Lan14g0742 385 PANTHER RING-H2 FINGER PROTEIN ATL4J 292 378 - -
Lan14g0742 385 PANTHER RING-H2 FINGER PROTEIN ATL4J 10 293 - -
Lan14g0742 385 MobiDBLite consensus disorder prediction 297 317 - -
Lan14g0742 385 CDD RING-H2_PA-TM-RING 113 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0742 Lan-Chr14 14411975 14413549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0742 13 373 C3H Transcription Factor Family AT2G20030 39.894 2.92e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0742 K10664 - gmx:100816668 413.305