Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0692 ATGGCTACTTCACTTTCTCTCAACCTCACTTTCTCATTTTACTACTTCTTCATCTTCCTCATTCTAATCAATTTTTCACACACCACACAACAACAACTACAACAAACCTCACCCCAAATAACTCCCAATAATAATAATAATCTCAATAATACACTTCCCACAGAAAAAACACCACCATCACAAAAATCCTCTTTTTCTTCTTTCAAACCAGGAATTGCAGTTGTTATTGGCGTTTTAACAACCATGTTTTCTCTTACCTTTCTCCTCCTCCTATACATCAAACACTGTTACACTGTCTCCAATGATAACAACAACAACACAATCAGTTATAACTCAACTACTACAACTACTTCTTCTTATCGCGGAGGGTTGCCATCTTTAACCGCAAGAAAAAACTCCGGCATTGACCGTTGCGTCATAGAATCGTTACCAATCTTCAGATTTGGATCATTAATGGGTCAAAAAGAAGGGTTAGATTGCGCAGTTTGTCTCACAAAATTTGAAGCCACAGAAGTTCTTCGCTTATTACCGAAATGCAAGCACGCTTTTCATGTAGAATGTGTAGATACATGGCTTGATGCACATTCAACTTGTCCTTTGTGCCGTTACCGAGTGGATCCAGAAGATATTTTCTTACTCCATGATACCAAAACCTCACACCAAAATCAAGAACAAGTTACTATAGACGTTGAAAAAGGAAGAAACTCATTGTCACAAATTTCAGATTCATCACAAACTCGTAGAATCTCTGGAAGACATTCATGGGTTGAAGAAAGAGAAGGTAAAAATAAGATCTTGCAAACGACATCGTTTTTGAGAAGATCATTGGACAGTGCAACTACGAGAAGAAAGAGTGAAAACGGCGTTGGTGTTGGTCGTTTCATGCGTCAAAGAAAAGATGGAATGTTATTATCAACAGAAAATGAACGGAGAATAGAGCATAGGATTAATATTGTGTCACCGCCGTGTATGAGATCAGAAGATCAACGGTGGAGCGATGTGCAACCGTTGGATTTGTTATATCTGACGTCAGAGATGATAATAAGCAATGGAGGAAGAAAAATGATAGATGATTATGGGAAAGGTGAAATAATAATAAATACAAGAAGTGTGTCTGAGATAACAGGGTTGAGTAGATTCTTAAGGAACAGTGGTATTGATGATAATAATGATAGTAACAGAGAAAAGGGTTTGGTTTCGAGGTGGTTGGCTTGGATTTCGATTACAAGGTCACAGACAGAGACATAG 1248 0.3782 MATSLSLNLTFSFYYFFIFLILINFSHTTQQQLQQTSPQITPNNNNNLNNTLPTEKTPPSQKSSFSSFKPGIAVVIGVLTTMFSLTFLLLLYIKHCYTVSNDNNNNTISYNSTTTTTSSYRGGLPSLTARKNSGIDRCVIESLPIFRFGSLMGQKEGLDCAVCLTKFEATEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDIFLLHDTKTSHQNQEQVTIDVEKGRNSLSQISDSSQTRRISGRHSWVEEREGKNKILQTTSFLRRSLDSATTRRKSENGVGVGRFMRQRKDGMLLSTENERRIEHRINIVSPPCMRSEDQRWSDVQPLDLLYLTSEMIISNGGRKMIDDYGKGEIIINTRSVSEITGLSRFLRNSGIDDNNDSNREKGLVSRWLAWISITRSQTET* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0692 415 CDD RING-H2_EL5_like 159 202 - -
Lan14g0692 415 SMART ring_2 160 201 IPR001841 -
Lan14g0692 415 Pfam Ring finger domain 159 202 IPR001841 -
Lan14g0692 415 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Lan14g0692 415 SUPERFAMILY RING/U-box 139 207 - -
Lan14g0692 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 412 - -
Lan14g0692 415 MobiDBLite consensus disorder prediction 34 64 - -
Lan14g0692 415 PANTHER RING-H2 FINGER PROTEIN ATL43 44 412 - -
Lan14g0692 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 209 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0692 Lan-Chr14 13868791 13870356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0692 66 405 C3H Transcription Factor Family AT5G05810 51.117 2.06e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0692 K19041 - jre:109009455 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0893 15 18220940 18222216 Lan14g0692 14 13868791 13870356 LSH