Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0672 ATGTTCGACAAGTTTACGGTCATGGTCTTCATGATCCTGGTCGTAACATTCTTCTTGCTGATTTTCATTGCTATCTACAATCGTCGGCGCAGTGAGCAAAGGATCAGAGGAAGATTCGACCTAAATAGTCCGATCGGCGGAAGCAACCTCCGGCGACGTGGATTAGACGAAGAGATCGTAGAAACATTTCCAACTTTCATCTACTCCACCGTGAAAAGCCTTAAGATAGGGATGGCCACGCTACAATGCGCCGTGTGCATAAACGAGTTCCAAGACGATGAAACGCTGCGTTTGATACCAGTTTGTAACCACGTTTTTCATCCTGAATGCATTGATGCATGGTTGGCTCATCACTCCACTTGTCCTGTTTGCAGAGCTAACCTTTCTCCCACCAATGACGAAGAAATCGCTATAGAAATTCGGAATCACACCGAACCGGAACCGGAACCGAACCCGGTTCAGGCCGATGAAGATAACAATGATAGTGTAAGAGAAGCTTCAGTTATACAAGAGTCCCCGAAATTGAATACTAATAATTCGGTTCATCAGAACCGTTCACCTATTTCAAGGGTAAAGGGGTTTAGCTTCAAGAATTTGTTCCCACGTTCAAACACGACGGGTCACTCGCTGGTTCAACTCGGTGAGAATTTTGAGAGGTTTACTTTGAGGTTGCCAGAAGAGGTGAAGAACAAATTGGTGATGACAAAGCTAAGAACTGCTAAGAGTTGGCACGTGGCTCTCACGCCTGAGGGTAGTGAGAAAAGGGTTCGTAGAACACGGAGTATAAACACTGGTCGTGGAAGGAGTTACATGGAACGGTTTGCCCGGTCGGACCGGAAAGGATTTAGTCCAAGGGGTAAGGATGGTTCGACCGGGTCAACCAAGGGTACTGATGAATCTAATAAAGAAGTGGGAGAACGATCTTTTGACCAACTAGTTCCTAAGAAATGA 951 0.4595 MFDKFTVMVFMILVVTFFLLIFIAIYNRRRSEQRIRGRFDLNSPIGGSNLRRRGLDEEIVETFPTFIYSTVKSLKIGMATLQCAVCINEFQDDETLRLIPVCNHVFHPECIDAWLAHHSTCPVCRANLSPTNDEEIAIEIRNHTEPEPEPNPVQADEDNNDSVREASVIQESPKLNTNNSVHQNRSPISRVKGFSFKNLFPRSNTTGHSLVQLGENFERFTLRLPEEVKNKLVMTKLRTAKSWHVALTPEGSEKRVRRTRSINTGRGRSYMERFARSDRKGFSPRGKDGSTGSTKGTDESNKEVGERSFDQLVPKK* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0672 316 SUPERFAMILY RING/U-box 82 130 - -
Lan14g0672 316 MobiDBLite consensus disorder prediction 299 316 - -
Lan14g0672 316 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Lan14g0672 316 MobiDBLite consensus disorder prediction 251 316 - -
Lan14g0672 316 CDD RING-H2_PA-TM-RING 82 125 - -
Lan14g0672 316 MobiDBLite consensus disorder prediction 142 162 - -
Lan14g0672 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 131 IPR013083 -
Lan14g0672 316 PANTHER RING FINGER DOMAIN-CONTAINING 3 250 - -
Lan14g0672 316 SMART ring_2 83 124 IPR001841 -
Lan14g0672 316 PANTHER RING-H2 FINGER PROTEIN ATL11 3 250 - -
Lan14g0672 316 MobiDBLite consensus disorder prediction 271 285 - -
Lan14g0672 316 Pfam Ring finger domain 82 125 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0672 Lan-Chr14 13665223 13666237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0672 7 301 Rapid Response to Elicitors AT3G05200 40.064 9.24e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0672 K10664 - jre:108987460 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0672 14 13665223 13666237 Lan14g0672 14 13665223 13666237 ECH
Lan15g0586 15 13261006 13263049 Lan14g0672 14 13665223 13666237 LSH
Lan9g1124 9 18615406 18616685 Lan14g0672 14 13665223 13666237 PCT
Lan14g0672 14 13665223 13666237 Lan9g1124 9 18615406 18616685 PCT