Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0670 ATGGTAATGGCGCTACGATTACAACATCATCCATGGAATCCTTCACTTACTCACTTTTCCACACAACACCAATCCCATAATCAAAACTCTTTCTTATCACTTCAGAAACATTCCTTAACCAATTTCTCTCTACGTTTATCCCTTTTTACAACCAAACAAACCCGTCCTCATTTCACTCTCAGATTCGCAACCACTTCCCAAAAAGAAGAAGAAACCCAACAAACTGAGACTGAGGAACCCACTGAAGAGTTTTCTCAAACAAGATTGCTTGCTCAGAACGTGCCTTGGACCAGTACCCCTGAAGATATTCGCTCTTTGTTTGAGAAACATGGCAAAGTTCTTCAAGTCGAGCTTTCTATGCATAACAAGACCCGAAACAGGGGATTGGCGTTTGTTGAAATGGGTTCGCCTGAAGAGGCTGTCGAAGCTATGAAAAATCTCGAATTATCTGAGTTTGAGGGTCGAATAATAAAACTGAATTATGCTAAGCCAAAAAAGAAGAAAACTCCACCACCCACTGGGGCACCAAAGCCAGAAGTATTATTTAACGTGTTTGTTGCGAACTTGTCATATGAAGCGAGGTCTAAAGATCTCAAGGAGTTTTTTGAGACAGGAAGTGGTAGTGAGAGTATTGTTTCTGCAGAGGTAATATTCCATGATACCCCGAGAAAGTCATCAGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAACAAGCTGATGAGGCTCTTACTGAGTTTGATGGAAAGATTTTTATGGGAAGGCCAATCAGGGTGGAACGTAGTAACCGATTTGTTAAACTAGCGGCAGAGGAGAGTGCAAAGTCTGAAGATGCATCTTCTGAGTTGAGTGTTAATGAGGCAGAAGCAAACATAGCTGACAAAGATGCATCTTCTGAGTTGAGCGTGAACGAGGCAGAACCAGATAAAGCTGATTGA 936 0.4177 MVMALRLQHHPWNPSLTHFSTQHQSHNQNSFLSLQKHSLTNFSLRLSLFTTKQTRPHFTLRFATTSQKEEETQQTETEEPTEEFSQTRLLAQNVPWTSTPEDIRSLFEKHGKVLQVELSMHNKTRNRGLAFVEMGSPEEAVEAMKNLELSEFEGRIIKLNYAKPKKKKTPPPTGAPKPEVLFNVFVANLSYEARSKDLKEFFETGSGSESIVSAEVIFHDTPRKSSGYGFVSFKSKKQADEALTEFDGKIFMGRPIRVERSNRFVKLAAEESAKSEDASSELSVNEAEANIADKDASSELSVNEAEPDKAD* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0670 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Lan14g0670 311 SMART rrm1_1 183 259 IPR000504 GO:0003723
Lan14g0670 311 SMART rrm1_1 88 160 IPR000504 GO:0003723
Lan14g0670 311 CDD RRM_SF 184 259 - -
Lan14g0670 311 MobiDBLite consensus disorder prediction 270 311 - -
Lan14g0670 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 263 IPR000504 GO:0003723
Lan14g0670 311 Gene3D - 168 275 IPR012677 -
Lan14g0670 311 Gene3D - 52 167 IPR012677 -
Lan14g0670 311 CDD RRM_SF 93 160 - -
Lan14g0670 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 157 IPR000504 GO:0003723
Lan14g0670 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 257 IPR000504 GO:0003723
Lan14g0670 311 PANTHER OS08G0483200 PROTEIN 3 290 - -
Lan14g0670 311 SUPERFAMILY RNA-binding domain, RBD 76 172 IPR035979 GO:0003676
Lan14g0670 311 MobiDBLite consensus disorder prediction 64 84 - -
Lan14g0670 311 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 3 290 - -
Lan14g0670 311 SUPERFAMILY RNA-binding domain, RBD 181 263 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0670 Lan-Chr14 13655899 13658257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0670 87 263 Eukaryotic Initiation Factors Gene Family AT3G16380 29.891 7.02e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0670 - - lang:109340717 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0670 14 13655899 13658257 Lan14g0670 14 13655899 13658257 ECH