Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0622 ATGCCTATATTTTCTCTTTATTTCTTCAATTATTTACTTATTTTTTGCAAATTATTTCCACCTCTTAATTGCAATCTCACAATCACCACATTCTGCTTCAACATAACAACCTTCCTTTCTAAACCATCTCAAATAAACTTTCAGAACCTTATTTTTTCAGAAGCCATGGCTGAAAGTGGAAGAACTACTGGCACCGTGAAATGGTTCAACGCACACAAAGGTTTCGGATTCATAGCTCCCAACGATGGCGGTGAGGATCTCTTCGTCCATCAAACTTCCATCCAATCTGACGGTTACCGCACCTTGTCGGAGGGCCAGTTGGTAGAGTTCACCGTCGATTTCAACGACAGTGGTAGAACCAAGGCCGTCGATGTTACCTCCTTGGTTGTTCAATCTCACCGTTTCGGTGGTGGAAGGAGGGGAAGGAGAGGTCGTGGTGATTATGGCGGTTACGGTGGACGATATGGCGGCAAGGAAGGCCCTGGTGATGGGAGAGGCGGAGGGATTGGACGGAGAGGTGGAGGAGGAGGAGGTTACAGTGGTGGTGGAGGAGGAGGTCCTGAGTGTTATAATTGTGGAAGAGGTGGTCATCTGGCGAGAGATTGTTATCAAGGACGGGGTGGTGGTAATCGGAGACGTGGTGGTGGAGGTGGTGGTGGAAGGTGTTTTAACTGCGGAGAGGAAGGACATTTTGCGAGGGAATGTCCAATAGTTGAAAAAATAGAATGA 729 0.4733 MPIFSLYFFNYLLIFCKLFPPLNCNLTITTFCFNITTFLSKPSQINFQNLIFSEAMAESGRTTGTVKWFNAHKGFGFIAPNDGGEDLFVHQTSIQSDGYRTLSEGQLVEFTVDFNDSGRTKAVDVTSLVVQSHRFGGGRRGRRGRGDYGGYGGRYGGKEGPGDGRGGGIGRRGGGGGGYSGGGGGGPECYNCGRGGHLARDCYQGRGGGNRRRGGGGGGGRCFNCGEEGHFARECPIVEKIE* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0622 242 PRINTS Cold shock protein signature 64 79 IPR002059 GO:0003676
Lan14g0622 242 PRINTS Cold shock protein signature 85 94 IPR002059 GO:0003676
Lan14g0622 242 PRINTS Cold shock protein signature 100 118 IPR002059 GO:0003676
Lan14g0622 242 Gene3D - 52 126 IPR012340 -
Lan14g0622 242 Pfam 'Cold-shock' DNA-binding domain 63 127 IPR002059 GO:0003676
Lan14g0622 242 SMART csp_8 63 128 IPR011129 GO:0003676
Lan14g0622 242 Pfam Zinc knuckle 221 236 IPR001878 GO:0003676|GO:0008270
Lan14g0622 242 Pfam Zinc knuckle 188 202 IPR001878 GO:0003676|GO:0008270
Lan14g0622 242 SUPERFAMILY Nucleic acid-binding proteins 61 127 IPR012340 -
Lan14g0622 242 ProSiteProfiles Zinc finger CCHC-type profile. 221 236 IPR001878 GO:0003676|GO:0008270
Lan14g0622 242 ProSiteProfiles Zinc finger CCHC-type profile. 189 202 IPR001878 GO:0003676|GO:0008270
Lan14g0622 242 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Lan14g0622 242 SMART c2hcfinal6 221 237 IPR001878 GO:0003676|GO:0008270
Lan14g0622 242 MobiDBLite consensus disorder prediction 135 171 - -
Lan14g0622 242 ProSiteProfiles Cold-shock (CSD) domain profile. 61 127 IPR002059 GO:0003676
Lan14g0622 242 PANTHER COLD SHOCK DOMAIN PROTEIN 2 56 236 - -
Lan14g0622 242 ProSitePatterns Cold-shock (CSD) domain signature. 75 94 IPR019844 -
Lan14g0622 242 Gene3D - 185 240 - -
Lan14g0622 242 SUPERFAMILY Retrovirus zinc finger-like domains 181 236 IPR036875 GO:0003676|GO:0008270
Lan14g0622 242 CDD CSP_CDS 63 126 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0622 Lan-Chr14 13109129 13110092 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lan14g0622 CSD 7e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0622 - - lang:109326521 347.051