Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0617 ATGTCTTTGAGTCCTCCAAGAGAGAGAAACAACAATGAACAACAAAGAACATACCAGCTATACTGGTGCTTCCAGTGCAATCGGATGGTCCGTTTTTCACCCTCAAACTCAAACCCTATCATGTGCCCACGCTGCTTCGGTCAATTCGTGTGCGAAATAAACATACCAAGGCCAAGGCTCGTGGTTGATTTTACCAACCACGACCCTTCACCAGAGGCGCGTTTACTTGAAGCACTTTCTCTCATGCTGGAACCTCCCATTCGACACACTCAACCTCGACGCCCTCGTTGGATTCACCACCAACAACCCGAAGAGGTTATAATTACAAGAAGACATCCACGTCATCATGGCTTAGAGTCCATTAGGCCTTCAGGTTCGGATGAACAACCCGAACCTGAAGGCATACAACACCGTCCACGTACATGGATCATCGTTCAACCCATCAACCCGTTCGAGCCACCACGTAGAAGGGAAAGTCCCAATCCTATTATGCCACGTGGCACGGATTCGAGAGATTACTACTTAGGACCGGGTTTAAATGAATTGATAGAGCAGTTGACGGAGAACGACCGGCAGGGTCCGGCGCCGGTGCCGGAGGGAGTGATTAACGGGATACCAACGGTGAAGATATTGAGCACGCATCTGAAGGAGAATTCGCAGTGTCCGGTTTGTCAAGAAGAGTTTGAAGTTGGTGGAGAAGCTAGAGAACTTCCATGCAAACATATATATCATTCTGAATGTATTGTTCCTTGGCTTAGGCTTCATAATTCTTGTCCGGTGTGCCGCCACGAGGTGCCGGTGCCGGAGGCGAAGGAGGAGGAGGAGAGTGGTGATGATGACGGAGGAGGTAGGTTTAGGAGGTGCTTGAGGTGGACACGTATTGGTTCTATTTGGCCTTTTCATAGAAGGGTTCATCCTGATACTACTTCTTCAAGGGCTTCAGAAGCTAATCCAAGAAATCACTCTTGCTGCATCCTTTAG 981 0.4883 MSLSPPRERNNNEQQRTYQLYWCFQCNRMVRFSPSNSNPIMCPRCFGQFVCEINIPRPRLVVDFTNHDPSPEARLLEALSLMLEPPIRHTQPRRPRWIHHQQPEEVIITRRHPRHHGLESIRPSGSDEQPEPEGIQHRPRTWIIVQPINPFEPPRRRESPNPIMPRGTDSRDYYLGPGLNELIEQLTENDRQGPAPVPEGVINGIPTVKILSTHLKENSQCPVCQEEFEVGGEARELPCKHIYHSECIVPWLRLHNSCPVCRHEVPVPEAKEEEESGDDDGGGRFRRCLRWTRIGSIWPFHRRVHPDTTSSRASEANPRNHSCCIL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0617 326 SMART ring_2 221 261 IPR001841 -
Lan14g0617 326 PANTHER - 10 279 - -
Lan14g0617 326 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Lan14g0617 326 SUPERFAMILY RING/U-box 201 268 - -
Lan14g0617 326 MobiDBLite consensus disorder prediction 113 136 - -
Lan14g0617 326 MobiDBLite consensus disorder prediction 305 326 - -
Lan14g0617 326 Pfam Ring finger domain 220 262 IPR001841 -
Lan14g0617 326 Pfam zinc-ribbon 19 53 IPR039525 GO:0061630
Lan14g0617 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 279 - -
Lan14g0617 326 CDD RING-H2_RNF126_like 220 262 - -
Lan14g0617 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 268 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0617 Lan-Chr14 13039258 13041300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0617 193 300 C3H Transcription Factor Family AT1G68180 42.478 1.23e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0617 K11982 - gmx:100787399 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0617 14 13039258 13041300 Lan14g0617 14 13039258 13041300 ECH