Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0552 ATGGATGACACCTTTTCTGATATTTTTGAAGACAAAGAGTTTGGTGGAGATGAACTCTTTGCCATTTTGGAAAGCCTAGAAGACTTCACTACTGATTTTCCTCTCATTAACAAACCTATTATTGGATCTTCAACTTTAAAAGAGAGTGAAGAGACATCGAGATTGGTGTCAACTTCTTCAAGTGCTCAAGTACAACAACAAGATTCTGAAGAAACTGAGCTTGAAATCTCACCAAAAAGTAAGAGACAGAAGGTTGCTGATCCTACAACTAGGACAGAAGAACAAAACGAAGATGGAGAACAAAGGGTTTCTCACATAACTGTGGAGCGTAACAGAAGAAAGCAAATGAATGAGCATTTGTCTGTGTTGAGGTCACTTATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCAATAATTGGAGGTGTGGTTGATTACATCCACGAGTTGCAGCAAGTGCTACAAGTCCTTGAGGCCAAAAAACAGAGAAAAGTTTACACTGATGTACTAAGCCCTAGGCTAGTTTCTTCAAGTCCAAGGCCTTCACCACTTAGTCCAAGAAAACCACCTCTGAGCCCTAGACTAAACCTACCCATTAGTCCAAGGACACCAAGACCAAGTAGCCCTTACAAACCAAGGTTGCAACCAACAGGTTACAATATTTCACCCACTATATCAACCTCTCTTGAACCATCTCCTACTTCTTCTGCTAACTCCTCCATCAATGACAATGTCAATGAGCTTGTTGCAAATTCAAAGTCTCCTATTGCTGATGTGGAGGTCAAGTTTTCAGGTCCAAATGTTCTTTTGAAAACGGTTTCTCAAAGAATTCCAGGTCAAGCTTTGAAGATTATGTCAGCATTGGAAGAACTTGCGCTTGAGATTCTCCATGTTAATATTAGTACTGTTGATAAAACCATGCAGAACTCGTTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 1011 0.4006 MDDTFSDIFEDKEFGGDELFAILESLEDFTTDFPLINKPIIGSSTLKESEETSRLVSTSSSAQVQQQDSEETELEISPKSKRQKVADPTTRTEEQNEDGEQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYIHELQQVLQVLEAKKQRKVYTDVLSPRLVSSSPRPSPLSPRKPPLSPRLNLPISPRTPRPSSPYKPRLQPTGYNISPTISTSLEPSPTSSANSSINDNVNELVANSKSPIADVEVKFSGPNVLLKTVSQRIPGQALKIMSALEELALEILHVNISTVDKTMQNSFTIKIGIECQLSAEELAQQIQQTFC* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0552 336 CDD bHLH_AtFAMA_like 104 174 - -
Lan14g0552 336 MobiDBLite consensus disorder prediction 56 104 - -
Lan14g0552 336 PANTHER TRANSCRIPTION FACTOR FAMA 8 336 IPR044283 GO:0003700|GO:0010052
Lan14g0552 336 MobiDBLite consensus disorder prediction 183 212 - -
Lan14g0552 336 MobiDBLite consensus disorder prediction 174 241 - -
Lan14g0552 336 MobiDBLite consensus disorder prediction 72 104 - -
Lan14g0552 336 MobiDBLite consensus disorder prediction 56 71 - -
Lan14g0552 336 Pfam Helix-loop-helix DNA-binding domain 101 152 IPR011598 GO:0046983
Lan14g0552 336 SMART finulus 106 157 IPR011598 GO:0046983
Lan14g0552 336 PANTHER - 8 336 - -
Lan14g0552 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 168 IPR036638 GO:0046983
Lan14g0552 336 Gene3D - 91 165 IPR036638 GO:0046983
Lan14g0552 336 MobiDBLite consensus disorder prediction 214 241 - -
Lan14g0552 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 151 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0552 Lan-Chr14 11708425 11712431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0552 1 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.549 2.63e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan14g0552 HLH 7.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0552 K20558 - gmx:100808130 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0884 15 18117337 18119459 Lan14g0552 14 11708425 11712431 LSH
Lan15g0715 15 15955075 15958411 Lan14g0552 14 11708425 11712431 LSH
Lan2g0941 2 20234854 20237870 Lan14g0552 14 11708425 11712431 PCT
Lan9g1131 9 18677585 18696691 Lan14g0552 14 11708425 11712431 PCT
Lan14g0552 14 11708425 11712431 Lan2g0941 2 20234854 20237870 PCT
Lan14g0552 14 11708425 11712431 Lan9g1131 9 18677585 18696691 PCT