Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan14g0537 | ATGATTATTAAGCGAAACCTGAAATCCCAAATGCCGAGTGTGAAACGGTGCAAACACAGTGACTCGGTTGGTGAAAAAGAAGAGTGTTCTTATGCTCGTAAGAAGAGGAAGAGGGCGAATAACGATTCATACCCTTTGAATCTTCTCGGCGACATCGCTGGCGGCGAAATACCGGTGAGCTTTCACGGTCTGCTGACTGAGAAAGGATTCTCTGTTTCGCGGTGCACCGAAGTTTCGTGCTCCACGCCATGCGAAGTGGAATCAAATTCGAAGGATGGTAGCTGTGGCAGTGTTTGTGGCGCCAAGCAAAATCCGGGCGGCGAGGTTCAGCGCCCCCCACTGGTTAGGACCTCAAGAGGGAGGGTTCAGGTGCTGCCGTCGCGGTTCAATGATTCTGTTATGGATAATTGGAGGAAAGACAGCAAGAGCAGCTTGCCTGACGGTGAATTTGATGATGAATTTGAACCCAAGACACAGAAATTCGGCTCCAAAGCTCCAAAAAATTGCAATCAGAATGCGAAAAAAGGGCGAAAGGATACGAAAATGGGTTACAATCCTCAAAACTATCCAGCATTATGTGAGGGGAATGCAAGTGAAAGTTTTGATTCAACTTTTGTTGATGAGAGAGGGATGCTTGTGGATATGGAAGGAGTTGAGTCAATGGGAAATGAGAGGGTTTTGAAGGAGAATGTGGAAAGGAAAGATGGGTTATATGGGCCAGAAGATTTTTATGCTGGTGATATAGTGTGGGCCAGAGCAAGGAAAAGGGAACCTTTTTGGCCAGCCATTGTAATTGATCCTATGTATCAGGCACCGGAACTGGTCCTAAGGTCTTATGTAGCTGATGCAGCTTGTGTCATGTTTCTTGGGTATACAGGGAATCAGAATGAAAGGGACTATGGGTGGGTGAAGGATGGCATGATTTTTCCATTTATGGATTATGTAGACAGGTATCTGGGGCAATCTGAATTGAGTTACTGTAAAGCCTCTGAATTCCAAGTGGCAATAGAAGAGGCATTTTTGGCAGACCAGGGCCACACAGAGAAATTGATAGCAGATATAAATTCAGCAGCTGCTAACACTGATATTGATGATACTATTCTAAAAGTCCTTCAGGAGGACAGTGGTCCAAACAAGTATGCAAGATATCACTTTCTGAACCGGGATTTATCTGATAAGAAGGACACACGACAATGTGAAGCCTGTGGGTTGGCCCTTCCTTTTAAGATGTCCAAGAAGACAAAGGATTCAACTCCTGGCAGCCAATTCCTGTGTAAAACATGTGCCAGGTTAACAAAATCAATTCATTATTGTGGCATATGTAAGGAAGTGCGGAATCATTCAGATAGTAGCAACTGGATGCGCTGTGATGGATGTAAAGTTTGGGTGCATGCAGAATGTGACAAAACTTCTGGAAGCAATTTCAAGAATCTTGAAGGCACTGATTATTTCTGCCCTACTTGCAAAGCCAAGTTTAGTTTTGAGTTATCTGATTCAGAAAAACTACGGCCAAAAGCCAAGTTTAACAAAAGCAATGGGCAGCTTGTGCTACCAAAAAAGGTCACTGTTCTCTGCAACGGTGTAGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGACTTTTGTGGACCAGAAAAGCAAGCACTCAACGAATGGGAAAAGCACACAGGTTCCAAATTAAGAAATTGGAAGACAAGTATAAGGGTGAAAGACTCCATGCTACCACTGGAACAATGGATGCTGCAGTTAGCAGAATTTCATACCAAGGCTGTAGTTTCTGTCAAACCTAAAAAAAATTCTCTTCAAGACAAGAAGCAGAAATTGTTTACCTTCTTGAGAGAGAAATATGAACCTGTTAATGCTAAGTGGACTACAGAACGTTGTGCTGTATGTAGATGGGTTGAAGACTGGGACTACAACAAAGTTATCATTTGCAATAGATGCCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTAAAGACTTAACATCTTGGGTTTGCAATGCTTGTGAAACACCTTACATTAAAAGGGAGTGTTGTCTTTGTCCTGTGAAAGGTGGTGCACTAAAGCCAACCGATATTGAAACATTATGGGTTCATGTCACATGTGCTTGGTTTCAACCTAAAGTCTCTTTTCCTAATGAGGAGAAGATGGAGCCTGCTCTGGGTATTCTCAGTATTCCATCAAATTCTTTTGCAAAGATTTGTGTCATCTGCAAGCAAATCCATGGTTCTTGTACACAATGCTTTAAGTGTTCAACTTATTTTCATACGATGTGTGCATCACGCGCCGGTTACCAAATGGAGTTGCACTGTTTTGAGAAAAATGGTAAGCAGACAACAAAATGGGTTTCTTATTGTGCTTACCACAGGGCTCCTAAACCCGACAATGTGTTGATTATGCAAACCCCTAATGGAGTTATTTCAACTAGAAGTCTTCTTAAAAATAAGAGAAAGGGTAGATCAAGGCTGATTGCATCCAATAAAATAAAGCAAGATGACCCTCCTCCTGTCGATAACGCAGAGGATGAGCCATTCACTGCCGCTAGGTGCCGTATTTTTCGAAGAACAAATCATACGGAAAAGAGAACAGTAGATGAAGCCATTTTTCATCAAGTGAGGGGTCCCCAGCATCATCCTTTAGCTGCAATACAGAGATTAAACAAATACAAACATGTGTTAGAGGAACCCAAGGCATTTTCCTCTTTCAGAGAGCGCATTCCTTACTTACAGAAAACCGAAAACGAACGTGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGTAGAGATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGAGGCAGCATTGTAGATCTGAGGGAGGCACGCTATAGATTAGAAGGCAAAGACTGCTATCTTTTTAAGATAAGTGATGAAGTGGTGGTAGATGCTACTGATAAAGGAAATATAGCAAGGCTGATTAATCATTCTTGTATGCCCAATTGCTATGCCAGGATCATGAGTGTGGGTGAAGACAAGAGCAGGATTATGCTCATTGCTAAGACTAATGTATCTGCTGGTGATGAGTTAACGTATGACTATTTATTTGATCCTGATGAACCAGATGAATCCAAAGTGCCTTGTCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG | 3198 | 0.4225 | MIIKRNLKSQMPSVKRCKHSDSVGEKEECSYARKKRKRANNDSYPLNLLGDIAGGEIPVSFHGLLTEKGFSVSRCTEVSCSTPCEVESNSKDGSCGSVCGAKQNPGGEVQRPPLVRTSRGRVQVLPSRFNDSVMDNWRKDSKSSLPDGEFDDEFEPKTQKFGSKAPKNCNQNAKKGRKDTKMGYNPQNYPALCEGNASESFDSTFVDERGMLVDMEGVESMGNERVLKENVERKDGLYGPEDFYAGDIVWARARKREPFWPAIVIDPMYQAPELVLRSYVADAACVMFLGYTGNQNERDYGWVKDGMIFPFMDYVDRYLGQSELSYCKASEFQVAIEEAFLADQGHTEKLIADINSAAANTDIDDTILKVLQEDSGPNKYARYHFLNRDLSDKKDTRQCEACGLALPFKMSKKTKDSTPGSQFLCKTCARLTKSIHYCGICKEVRNHSDSSNWMRCDGCKVWVHAECDKTSGSNFKNLEGTDYFCPTCKAKFSFELSDSEKLRPKAKFNKSNGQLVLPKKVTVLCNGVEGIYFPSLHLVVCKCDFCGPEKQALNEWEKHTGSKLRNWKTSIRVKDSMLPLEQWMLQLAEFHTKAVVSVKPKKNSLQDKKQKLFTFLREKYEPVNAKWTTERCAVCRWVEDWDYNKVIICNRCQIAVHQECYGARNVKDLTSWVCNACETPYIKRECCLCPVKGGALKPTDIETLWVHVTCAWFQPKVSFPNEEKMEPALGILSIPSNSFAKICVICKQIHGSCTQCFKCSTYFHTMCASRAGYQMELHCFEKNGKQTTKWVSYCAYHRAPKPDNVLIMQTPNGVISTRSLLKNKRKGRSRLIASNKIKQDDPPPVDNAEDEPFTAARCRIFRRTNHTEKRTVDEAIFHQVRGPQHHPLAAIQRLNKYKHVLEEPKAFSSFRERIPYLQKTENERVCFGRSGIHGWGLFARRDIQEGEMVLEYRGEQVRGSIVDLREARYRLEGKDCYLFKISDEVVVDATDKGNIARLINHSCMPNCYARIMSVGEDKSRIMLIAKTNVSAGDELTYDYLFDPDEPDESKVPCLCKAPNCRKFMN* | 1066 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan14g0537 | 1065 | ProSitePatterns | Zinc finger PHD-type signature. | 632 | 677 | IPR019786 | - | |
| Lan14g0537 | 1065 | CDD | SET_SETD1-like | 910 | 1061 | - | - | |
| Lan14g0537 | 1065 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 681 | 799 | IPR013083 | - | |
| Lan14g0537 | 1065 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 430 | 492 | IPR013083 | - | |
| Lan14g0537 | 1065 | SMART | PHD_3 | 742 | 798 | IPR001965 | - | |
| Lan14g0537 | 1065 | SMART | PHD_3 | 437 | 489 | IPR001965 | - | |
| Lan14g0537 | 1065 | SMART | PHD_3 | 631 | 678 | IPR001965 | - | |
| Lan14g0537 | 1065 | CDD | PHD_TCF19_like | 438 | 488 | - | - | |
| Lan14g0537 | 1065 | Pfam | PHD-finger | 437 | 490 | IPR019787 | - | |
| Lan14g0537 | 1065 | MobiDBLite | consensus disorder prediction | 155 | 183 | - | - | |
| Lan14g0537 | 1065 | Pfam | PHD-finger | 644 | 678 | - | - | |
| Lan14g0537 | 1065 | CDD | PHD_ATX3_4_5_like | 631 | 677 | IPR042011 | - | |
| Lan14g0537 | 1065 | ProSiteProfiles | Post-SET domain profile. | 1049 | 1065 | IPR003616 | - | |
| Lan14g0537 | 1065 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 | 1 | 1065 | - | - | |
| Lan14g0537 | 1065 | SUPERFAMILY | FYVE/PHD zinc finger | 630 | 694 | IPR011011 | - | |
| Lan14g0537 | 1065 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 683 | 798 | IPR034732 | - | |
| Lan14g0537 | 1065 | ProSiteProfiles | SET domain profile. | 923 | 1040 | IPR001214 | GO:0005515 | |
| Lan14g0537 | 1065 | Pfam | PHD-zinc-finger like domain | 685 | 797 | - | - | |
| Lan14g0537 | 1065 | Pfam | SET domain | 934 | 1039 | IPR001214 | GO:0005515 | |
| Lan14g0537 | 1065 | SMART | PostSET_3 | 1049 | 1065 | IPR003616 | - | |
| Lan14g0537 | 1065 | MobiDBLite | consensus disorder prediction | 8 | 34 | - | - | |
| Lan14g0537 | 1065 | ProSiteProfiles | Zinc finger PHD-type profile. | 435 | 491 | IPR019787 | - | |
| Lan14g0537 | 1065 | SMART | set_7 | 923 | 1046 | IPR001214 | GO:0005515 | |
| Lan14g0537 | 1065 | Pfam | PWWP domain | 246 | 339 | IPR000313 | - | |
| Lan14g0537 | 1065 | SUPERFAMILY | Tudor/PWWP/MBT | 238 | 345 | - | - | |
| Lan14g0537 | 1065 | CDD | ePHD_ATX3_4_5_like | 686 | 797 | IPR041955 | - | |
| Lan14g0537 | 1065 | SUPERFAMILY | FYVE/PHD zinc finger | 434 | 492 | IPR011011 | - | |
| Lan14g0537 | 1065 | SUPERFAMILY | SET domain | 914 | 1065 | IPR046341 | - | |
| Lan14g0537 | 1065 | MobiDBLite | consensus disorder prediction | 14 | 34 | - | - | |
| Lan14g0537 | 1065 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 1065 | IPR025780 | - | |
| Lan14g0537 | 1065 | Gene3D | SET domain | 908 | 1065 | IPR046341 | - | |
| Lan14g0537 | 1065 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 618 | 680 | IPR013083 | - | |
| Lan14g0537 | 1065 | Gene3D | - | 240 | 347 | - | - | |
| Lan14g0537 | 1065 | ProSiteProfiles | Zinc finger PHD-type profile. | 629 | 680 | IPR019787 | - | |
| Lan14g0537 | 1065 | PANTHER | PHD FINGER PROTEINS | 1 | 1065 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan14g0537 | Lan-Chr14 | 11085540 | 11095003 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan14g0537 | 632 | 797 | C2H2 Transcription Factor Family | AT3G14740 | 31.792 | 3.20e-19 | 88.6 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Lan14g0537 | zf-HC5HC2H_2 | 4.3e-28 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan14g0537 | - | - | aprc:113853254 | 1680.23 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan15g0688 | 15 | 15543615 | 15553193 | Lan14g0537 | 14 | 11085540 | 11095003 | LSH | |
| Lan14g0537 | 14 | 11085540 | 11095003 | Lan3g0820 | 3 | 15566537 | 15575474 | LSH |