Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0519 ATGGGTAGCTTCAGCGGAGATGAGGAATGTGAGTTTTTCGATGCTGTTGAGGATATTGGTTCTATTGCTGATGCAAAATTGGATGGCAAAGACAATGATTCTAGTGCTAGAGAAGGAATGTCCAAAGGTTTTGATTATGATGTGTGGATTAGGAGACCGAGGAGTGTGAGAGAGCGAAGGAGTAGGTTTATGCAGAGGTTGGGGTTGGGTGTGACTGAGAATGGAGTTAAAAATTCAGTGGATTTGGGTGGTGGTGGTGGTGTTGAAGGGGAAAAGGTGAATAATGGTGTGAATGGTAGTGATGGGGCTGTGGATAGAAATTGTGGTTTTCAGGAGGAGTTCTGTTCGAGCCGGTCATCGATGTCTTGTTGGTCTACTATGAATTCTTCGGAGGAGTTTGGTTTGGTGGAGAATTTGCCTTGTCACATGGATCAGGAGGGGCAGGATAGGAGGATGAGCTATTGTGGTAGAGATAAGGATTCGGATAGGTCGGTGGTTGCTGAGGAACCTGAGGATTCTGAGAACACCTTTCAACGTCTGGCGAGTAGGGAGTTTGAGGAGATCGATGCGGATGCTTTATCCAAGAAGTCCAACGGGACTGGAAGAGGTTGGTTAAGAAGATTGCAGTCGATAACGTGTATCAGGGATAGGCAAAGTGAAAGTGAAAATGTGGGACAAGGAGATAGTTGTGCATTCTCAGGGTGTAGGCTTCAGAAAGTTAAGGTTCGTCAATGCAAGAAGCAAATGAAGGAACTTTCAGCTCTTTACACGAGGCAAGACATCCAAGCACACGAAGGTTCGATTTTGACCATGAAATTCAGCCCTGATGGACAGTATCTTGCCAGTGCTGGCGAAGATGGTGTTGTGCGCGTGTGGCAAGTGGTTGTCGATGATAGGTGTAATGAAATTGACATTCCTGAAATTGATCCATCCTGCATTTACTTCACAGTGAATGATCTCTCTGAATTGAGACCACTGTTTATGGACAAGGAAAAACTTACCAAAGTGAAGGGCCTGAAAAAAACATCAGATTCAGCATGCATTATTTTCCCGCCTAAGATCTTTCGGTTGTTGGAGAAACCATTGCATGAGTTCCACGGTCATAGAGGGGAAGTTTTGGATCTCTCTTGGTCAAAGAATAATTATCTTCTGTCATCTTCAGAGGACAAAACTGTCCGTCTATGGCACATGAAGCATGAAAACTGCCTGAAAATTTTCTCACACAGTAATTATGTGACATGCATACAATTCAATCCCATGGATGACAATTATTTCATTAGTGGATGTATAGATGGAAAAGTGCGCATCTGGGCAGTTCCTGATTGTCATGTTGTTGATTGGATTGATACTAGAGAGATAGTGACTGCAGTATGTTATCGGCCTGATGGGCAGGCAGGGATTATCGGCTCCATGGCAGGCAATTGTCGATATTTTAATGCATCAGAGAATCACTTGCAGTTAGATTCCCAACCATGCTTACTTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTAGCTTTCAGTTTCTTTCACAAGATTCTAACAAAGTTATGGTTACTTGTGCTCATTCACAAGTCAGAATCCTTCATGAGCATAATGTGATTGGCAAATACAAAAGCCTAAGCGGCGGGAGTGCATTGTCTGCATCTTTTACTTCTGATGGGAAACATATATTATCTGCATGTGAGGACTCTAATGTTTATCTATGGAACCTTAGTCAGGATGAGTCTTGTCCAACAAAAGTTAAGAAGATTACATCTTGTGAGCGTTTTTTCTCGAATGCATCTGTTGCAATACCTTGGCATGGTTTGAAATCTCAAAATACTGAAAACGAACTTCAAGTGGATGTCCTGGATAAAAGATTGCCTCTAGGTATTCGACTCAGTCCACCTGCTTCTTTCTCTCTCGACCAAGAGTTTTTCTTGGAGTCTTTTCCCAAGGGATCTGCGACTTGGCCTGAAGATAAACTTCCTGTTTCAAGCTCCAAGGCTAAAACATCTGTGATGCATAAATCTGAATACAAGTTCTTGAAATCTTCTTGTAAGAGTACCTCCCATTCTCATGCGTGGGGCATGGTGATTGTTACTGCAGGATGGGATGGGCGAATAAAATCATTCCACAATCATGGGTTACCTGTACTGGTTTGA 2148 0.4288 MGSFSGDEECEFFDAVEDIGSIADAKLDGKDNDSSAREGMSKGFDYDVWIRRPRSVRERRSRFMQRLGLGVTENGVKNSVDLGGGGGVEGEKVNNGVNGSDGAVDRNCGFQEEFCSSRSSMSCWSTMNSSEEFGLVENLPCHMDQEGQDRRMSYCGRDKDSDRSVVAEEPEDSENTFQRLASREFEEIDADALSKKSNGTGRGWLRRLQSITCIRDRQSESENVGQGDSCAFSGCRLQKVKVRQCKKQMKELSALYTRQDIQAHEGSILTMKFSPDGQYLASAGEDGVVRVWQVVVDDRCNEIDIPEIDPSCIYFTVNDLSELRPLFMDKEKLTKVKGLKKTSDSACIIFPPKIFRLLEKPLHEFHGHRGEVLDLSWSKNNYLLSSSEDKTVRLWHMKHENCLKIFSHSNYVTCIQFNPMDDNYFISGCIDGKVRIWAVPDCHVVDWIDTREIVTAVCYRPDGQAGIIGSMAGNCRYFNASENHLQLDSQPCLLGKKKLPGRGITSFQFLSQDSNKVMVTCAHSQVRILHEHNVIGKYKSLSGGSALSASFTSDGKHILSACEDSNVYLWNLSQDESCPTKVKKITSCERFFSNASVAIPWHGLKSQNTENELQVDVLDKRLPLGIRLSPPASFSLDQEFFLESFPKGSATWPEDKLPVSSSKAKTSVMHKSEYKFLKSSCKSTSHSHAWGMVIVTAGWDGRIKSFHNHGLPVLV* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0519 715 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 294 IPR001680 GO:0005515
Lan14g0519 715 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Lan14g0519 715 SUPERFAMILY WD40 repeat-like 257 705 IPR036322 GO:0005515
Lan14g0519 715 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 398 - -
Lan14g0519 715 Pfam WD domain, G-beta repeat 401 437 IPR001680 GO:0005515
Lan14g0519 715 Pfam WD domain, G-beta repeat 360 395 IPR001680 GO:0005515
Lan14g0519 715 Pfam WD domain, G-beta repeat 262 292 IPR001680 GO:0005515
Lan14g0519 715 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 437 IPR001680 GO:0005515
Lan14g0519 715 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 714 - -
Lan14g0519 715 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Lan14g0519 715 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Lan14g0519 715 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
Lan14g0519 715 Gene3D - 228 603 IPR015943 GO:0005515
Lan14g0519 715 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 405 IPR001680 GO:0005515
Lan14g0519 715 SMART WD40_4 522 571 IPR001680 GO:0005515
Lan14g0519 715 SMART WD40_4 254 293 IPR001680 GO:0005515
Lan14g0519 715 SMART WD40_4 358 396 IPR001680 GO:0005515
Lan14g0519 715 SMART WD40_4 399 438 IPR001680 GO:0005515
Lan14g0519 715 SMART WD40_4 441 479 IPR001680 GO:0005515
Lan14g0519 715 ProSitePatterns Trp-Asp (WD) repeats signature. 558 572 IPR019775 -
Lan14g0519 715 PANTHER WD REPEAT DOMAIN 44 7 714 IPR040324 -
Lan14g0519 715 MobiDBLite consensus disorder prediction 156 176 - -
Lan14g0519 715 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 437 - -
Lan14g0519 715 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 580 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0519 Lan-Chr14 10834371 10838574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0519 261 419 U-box Gene Family AT2G33340 23.529 2.88e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0519 - - gmx:100817209 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0519 14 10834371 10838574 Lan3g0721 3 13203804 13208768 LSH