LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan14g0519	ATGGGTAGCTTCAGCGGAGATGAGGAATGTGAGTTTTTCGATGCTGTTGAGGATATTGGTTCTATTGCTGATGCAAAATTGGATGGCAAAGACAATGATTCTAGTGCTAGAGAAGGAATGTCCAAAGGTTTTGATTATGATGTGTGGATTAGGAGACCGAGGAGTGTGAGAGAGCGAAGGAGTAGGTTTATGCAGAGGTTGGGGTTGGGTGTGACTGAGAATGGAGTTAAAAATTCAGTGGATTTGGGTGGTGGTGGTGGTGTTGAAGGGGAAAAGGTGAATAATGGTGTGAATGGTAGTGATGGGGCTGTGGATAGAAATTGTGGTTTTCAGGAGGAGTTCTGTTCGAGCCGGTCATCGATGTCTTGTTGGTCTACTATGAATTCTTCGGAGGAGTTTGGTTTGGTGGAGAATTTGCCTTGTCACATGGATCAGGAGGGGCAGGATAGGAGGATGAGCTATTGTGGTAGAGATAAGGATTCGGATAGGTCGGTGGTTGCTGAGGAACCTGAGGATTCTGAGAACACCTTTCAACGTCTGGCGAGTAGGGAGTTTGAGGAGATCGATGCGGATGCTTTATCCAAGAAGTCCAACGGGACTGGAAGAGGTTGGTTAAGAAGATTGCAGTCGATAACGTGTATCAGGGATAGGCAAAGTGAAAGTGAAAATGTGGGACAAGGAGATAGTTGTGCATTCTCAGGGTGTAGGCTTCAGAAAGTTAAGGTTCGTCAATGCAAGAAGCAAATGAAGGAACTTTCAGCTCTTTACACGAGGCAAGACATCCAAGCACACGAAGGTTCGATTTTGACCATGAAATTCAGCCCTGATGGACAGTATCTTGCCAGTGCTGGCGAAGATGGTGTTGTGCGCGTGTGGCAAGTGGTTGTCGATGATAGGTGTAATGAAATTGACATTCCTGAAATTGATCCATCCTGCATTTACTTCACAGTGAATGATCTCTCTGAATTGAGACCACTGTTTATGGACAAGGAAAAACTTACCAAAGTGAAGGGCCTGAAAAAAACATCAGATTCAGCATGCATTATTTTCCCGCCTAAGATCTTTCGGTTGTTGGAGAAACCATTGCATGAGTTCCACGGTCATAGAGGGGAAGTTTTGGATCTCTCTTGGTCAAAGAATAATTATCTTCTGTCATCTTCAGAGGACAAAACTGTCCGTCTATGGCACATGAAGCATGAAAACTGCCTGAAAATTTTCTCACACAGTAATTATGTGACATGCATACAATTCAATCCCATGGATGACAATTATTTCATTAGTGGATGTATAGATGGAAAAGTGCGCATCTGGGCAGTTCCTGATTGTCATGTTGTTGATTGGATTGATACTAGAGAGATAGTGACTGCAGTATGTTATCGGCCTGATGGGCAGGCAGGGATTATCGGCTCCATGGCAGGCAATTGTCGATATTTTAATGCATCAGAGAATCACTTGCAGTTAGATTCCCAACCATGCTTACTTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTAGCTTTCAGTTTCTTTCACAAGATTCTAACAAAGTTATGGTTACTTGTGCTCATTCACAAGTCAGAATCCTTCATGAGCATAATGTGATTGGCAAATACAAAAGCCTAAGCGGCGGGAGTGCATTGTCTGCATCTTTTACTTCTGATGGGAAACATATATTATCTGCATGTGAGGACTCTAATGTTTATCTATGGAACCTTAGTCAGGATGAGTCTTGTCCAACAAAAGTTAAGAAGATTACATCTTGTGAGCGTTTTTTCTCGAATGCATCTGTTGCAATACCTTGGCATGGTTTGAAATCTCAAAATACTGAAAACGAACTTCAAGTGGATGTCCTGGATAAAAGATTGCCTCTAGGTATTCGACTCAGTCCACCTGCTTCTTTCTCTCTCGACCAAGAGTTTTTCTTGGAGTCTTTTCCCAAGGGATCTGCGACTTGGCCTGAAGATAAACTTCCTGTTTCAAGCTCCAAGGCTAAAACATCTGTGATGCATAAATCTGAATACAAGTTCTTGAAATCTTCTTGTAAGAGTACCTCCCATTCTCATGCGTGGGGCATGGTGATTGTTACTGCAGGATGGGATGGGCGAATAAAATCATTCCACAATCATGGGTTACCTGTACTGGTTTGA	2148	0.4288	MGSFSGDEECEFFDAVEDIGSIADAKLDGKDNDSSAREGMSKGFDYDVWIRRPRSVRERRSRFMQRLGLGVTENGVKNSVDLGGGGGVEGEKVNNGVNGSDGAVDRNCGFQEEFCSSRSSMSCWSTMNSSEEFGLVENLPCHMDQEGQDRRMSYCGRDKDSDRSVVAEEPEDSENTFQRLASREFEEIDADALSKKSNGTGRGWLRRLQSITCIRDRQSESENVGQGDSCAFSGCRLQKVKVRQCKKQMKELSALYTRQDIQAHEGSILTMKFSPDGQYLASAGEDGVVRVWQVVVDDRCNEIDIPEIDPSCIYFTVNDLSELRPLFMDKEKLTKVKGLKKTSDSACIIFPPKIFRLLEKPLHEFHGHRGEVLDLSWSKNNYLLSSSEDKTVRLWHMKHENCLKIFSHSNYVTCIQFNPMDDNYFISGCIDGKVRIWAVPDCHVVDWIDTREIVTAVCYRPDGQAGIIGSMAGNCRYFNASENHLQLDSQPCLLGKKKLPGRGITSFQFLSQDSNKVMVTCAHSQVRILHEHNVIGKYKSLSGGSALSASFTSDGKHILSACEDSNVYLWNLSQDESCPTKVKKITSCERFFSNASVAIPWHGLKSQNTENELQVDVLDKRLPLGIRLSPPASFSLDQEFFLESFPKGSATWPEDKLPVSSSKAKTSVMHKSEYKFLKSSCKSTSHSHAWGMVIVTAGWDGRIKSFHNHGLPVLV*	716

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan14g0519	715	ProSiteProfiles	Trp-Asp (WD) repeats profile.	261	294	IPR001680	GO:0005515
Lan14g0519	715	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	261	294	-	-
Lan14g0519	715	SUPERFAMILY	WD40 repeat-like	257	705	IPR036322	GO:0005515
Lan14g0519	715	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	365	398	-	-
Lan14g0519	715	Pfam	WD domain, G-beta repeat	401	437	IPR001680	GO:0005515
Lan14g0519	715	Pfam	WD domain, G-beta repeat	360	395	IPR001680	GO:0005515
Lan14g0519	715	Pfam	WD domain, G-beta repeat	262	292	IPR001680	GO:0005515
Lan14g0519	715	ProSiteProfiles	Trp-Asp (WD) repeats profile.	405	437	IPR001680	GO:0005515
Lan14g0519	715	PANTHER	TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN	7	714	-	-
Lan14g0519	715	PRINTS	G protein beta WD-40 repeat signature	280	294	IPR020472	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan14g0519	Lan-Chr14	10834371	10838574	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan14g0519	261	419	U-box Gene Family	AT2G33340	23.529	2.88e-07	51.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan14g0519	-		-	gmx:100817209	986.097

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan14g0519	14	10834371	10838574	Lan3g0721	3	13203804	13208768	LSH

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