Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0513 ATGGCGATGGATTTAGTAGTTCAAGCCTCGCTTGCTCCAGTATCGGAGTTACTTTCCCACACCATCTTTACAATATTTGACACTGTCAAAGCAGCCAATGAGGTTGTCATTCACAAAGAAAATTTTAAAAAATTCTCAATTCACTTGGAGAAGATCTCATTTATATTGAAGTCTTTGTCAAAGGAAAACACACACAATTCCGAGAGCTTCGGTAATGCTATGAATGCTCTCAACCGAGAGGTTGAAGTTGCTAAGAAGCTGGTTTTGGAATGCAGCAGTAGAAGTAAGGTTTATCTTCTAATTAATTCCCGAAGGATTGTTTCGCGCTTGAAGTGTTGTATTGAAGATATAAGTAGAGCAGTCAATCTTATCCCTTTGTCCTCTTTGGACATTAACATTGGTTTACACAAAGAGATAAGTGAGCTATGCTGGAACATGTTAGATTCCGAGTATCAAACAGCTGCACTAGATGAGGAAATCTTGGGAAAAATTGAGACTGCAATACAAGAGGGAAATGCGGATCGATCATATGTGAATCAGTTGCTACTTTGTATTGCAGATGCTATTGGTGTCTCCACTGAGCATGCTGCTTTGAAGAGAGAATTTGAAGAACTGAAAAGCGATATAGAGATTGCTAAATCTAGGAAAGATATGGCAGAAGTTCTACATATGGAGCAGATTATTTCAGTGCTCGAAAAGTCTGATTCGATAACTTCAGCACGGGAGAAGGAAAAGAAGTATTTTGAAAAGAGAAATTCTTTAGGAAGGAGGCCATTGCTGCCCTTGCATTCATTTTACTGCCCAATCTCTCTTGATATTATGGTGGACCCTGTGGAGACTTCTTCCGGCAAGACATTTGAGAGAAGTGCAATCGAGAGGTGGTTCGCCGAAGGGAACAGTCACTGTCCTTTGACCATGTTGCCTTTGGATACTTCTATCTTAAGGCCTAATAAGACTCTTAGACAATCTATTGAAGAATGGAAAGACCGGAACACAATCATTACCATTTCTACTATCAAGTCCCAACTTGAAACAGATGAAGAAGAGGAAGTGCTAGAGTCCTTAGACAAATTGCAGGATCTGTGCTTAGAAAGAGAGATTAACAGAGAATGGTTGAAAATGGAGAATTACATTGCTGTTCTTGTTGGACTTCTTGGTTCTAAAAATCGTGAAATAAGGAAGCGCGTTCTTATCATCTTGTCTTTACTTGCAGTGGATAATGAAGAGAACAAGGAAGATATTGCTAAAGTGGATAATGCACTCGGATCAATTGTTCGCTCACTTGCACGTCGAATTGAGGAAAGTAAGTTAGCGTTGGAGTTGCTGTTGGAGTTATCTAAAAGTGAAATGGTGCGTGGTCTCATAGGTAACATTCAAGGAAGCATACTTCTCCTGATGACAATGTTAAACAGTGATGACGTTGAAGCATCCAAAAATGCGCATGAGCTTCTGGAGAACCTCTCTTTCCTTGAACAGAATGTCATAGAAATGGCAAAGGCAAATTATCTTAAGCCTTTGCTGCTGAACCTTTCTACAGGACCAGAAAACATGAAGTTAATCATGACAGAAACTTTGTCAAAAATCGCATTGACAGACCAGAATAAATTGTCCTTAGTCAAAGATGGGGCATTGCAGCCTCTTCTTCGTCTGCTCGTAAATGATAACGTGGAAATCAAGAAAGTGGTTGTCAAAGCTCTACTACAGCTCTCAAGCCTGCCCGAGAATGGCCTTCAGATGATACGGGAAGGTGTTGATCAACCACTATTGGAGCTGCTATACTTTCACAGTTTACAGTCCCCTGCTTTGCGCAAAGAAGTTGTTGCCACGATCATGCATCTCGCCATATCAACAACTCATCAACAAATTGAAGAAGAACGGGTCTCGTTGTTAGATTCTGAGGAAGATATATTCAAATTCTTCTCTTTAATTTCATTAACAGGACCTGAGATACAAATCATGATTCTCAAAGCTTTCCATGCATTGTGCCAGTCTTTCTCTGGCTTCACCATCAGAAAGAGGTTGAAACAGATATCAGCTGCCAAAGTACTGGTCCATTTGGTAGAGCTTAATGCTCAAACAGTGCGGGTAAATGCGTTGAAGCTTTTCTATTGCTTGACAGAAGACAGTGATTACAGCAACTTCTCATCACATATAACTGAAAGGTTTGTTAAACTCTTGGTTACCATCATCGACACTTCCGATGAAGCAGAAGAGATGGTTGCTGCTTTGGGCACTATATCTAAACTACCACAGGAGTCACACATGACCCAGTGGCTTCTAGATTCTGGGGCACTTCAAACCATTTTGGCTTGTCTTACAGATCAAAACAAACATGCCTCACACAAAAAGCAAGTCATAGAGAACTCTGTCCAAGCGCTTTGTCGTTTTACTGTCTCGACAAATGTGGAATGGCAAAAGAGAGTAGCCGAAGAAGGCCTAATCCCAGTGCTGGTGCAATTGCTGGTTTCTGGAACACCTATTTCAAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCGGAAAGTTCATACCGCTTGAGCAAGCCGATAAAGAAGCCGAGTATTTTCAAAGCCTGCTTTATAGCCAGGGAAATTGGTTGTCCAGCACACAAAGGCACTTGTTCAATTGAGTCTTCATTCTGCATTTTAGAAGCTAATGCTTTGGATCCCCTGGTGAGGATGCTTAGCGAGCAAGATGTTGGAACATGTGAAGCTTCCTTAGATGCACTATTTACTTTGCTCGATGCCGAAGCGCCACAGAGTGGAAGTAAGGTACTTGAAGATGCAAATGCTAATACACCATTGATAAAATTGTTGAACGTTCAAGCTACAAGGTTGCAGGAAAAAACTCTGATCGCTCTAGAACAAATTTTTCAACTGGATGAAATGAAAAATAAGTACAAAACTGTGGCCACAATGCCCTTGGTAGACATAACTCAGAAGAAAGATAGTCGATTGAGAAGCCTTGCTGCCAAAAACCTTGCTCAATTGGGAGTGATTGATAAACAGTCTTCTTATTTTTAG 3024 0.4064 MAMDLVVQASLAPVSELLSHTIFTIFDTVKAANEVVIHKENFKKFSIHLEKISFILKSLSKENTHNSESFGNAMNALNREVEVAKKLVLECSSRSKVYLLINSRRIVSRLKCCIEDISRAVNLIPLSSLDINIGLHKEISELCWNMLDSEYQTAALDEEILGKIETAIQEGNADRSYVNQLLLCIADAIGVSTEHAALKREFEELKSDIEIAKSRKDMAEVLHMEQIISVLEKSDSITSAREKEKKYFEKRNSLGRRPLLPLHSFYCPISLDIMVDPVETSSGKTFERSAIERWFAEGNSHCPLTMLPLDTSILRPNKTLRQSIEEWKDRNTIITISTIKSQLETDEEEEVLESLDKLQDLCLEREINREWLKMENYIAVLVGLLGSKNREIRKRVLIILSLLAVDNEENKEDIAKVDNALGSIVRSLARRIEESKLALELLLELSKSEMVRGLIGNIQGSILLLMTMLNSDDVEASKNAHELLENLSFLEQNVIEMAKANYLKPLLLNLSTGPENMKLIMTETLSKIALTDQNKLSLVKDGALQPLLRLLVNDNVEIKKVVVKALLQLSSLPENGLQMIREGVDQPLLELLYFHSLQSPALRKEVVATIMHLAISTTHQQIEEERVSLLDSEEDIFKFFSLISLTGPEIQIMILKAFHALCQSFSGFTIRKRLKQISAAKVLVHLVELNAQTVRVNALKLFYCLTEDSDYSNFSSHITERFVKLLVTIIDTSDEAEEMVAALGTISKLPQESHMTQWLLDSGALQTILACLTDQNKHASHKKQVIENSVQALCRFTVSTNVEWQKRVAEEGLIPVLVQLLVSGTPISKQNAAISIKQFSESSYRLSKPIKKPSIFKACFIAREIGCPAHKGTCSIESSFCILEANALDPLVRMLSEQDVGTCEASLDALFTLLDAEAPQSGSKVLEDANANTPLIKLLNVQATRLQEKTLIALEQIFQLDEMKNKYKTVATMPLVDITQKKDSRLRSLAAKNLAQLGVIDKQSSYF* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0513 1007 CDD RING-Ubox_PUB 265 306 IPR045210 -
Lan14g0513 1007 SMART arm_5 572 615 IPR000225 GO:0005515
Lan14g0513 1007 SMART arm_5 874 915 IPR000225 GO:0005515
Lan14g0513 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Lan14g0513 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Lan14g0513 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Lan14g0513 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Lan14g0513 1007 Gene3D - 16 127 IPR036537 GO:0007166
Lan14g0513 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1007 - -
Lan14g0513 1007 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1007 - -
Lan14g0513 1007 Coils Coil 195 215 - -
Lan14g0513 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lan14g0513 1007 Gene3D - 628 850 IPR011989 -
Lan14g0513 1007 Gene3D - 338 441 IPR011989 -
Lan14g0513 1007 Gene3D - 855 996 IPR011989 -
Lan14g0513 1007 Pfam MCAfunc domain 29 141 IPR045766 -
Lan14g0513 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Lan14g0513 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Lan14g0513 1007 Gene3D - 442 627 IPR011989 -
Lan14g0513 1007 SUPERFAMILY RING/U-box 260 333 - -
Lan14g0513 1007 SUPERFAMILY ARM repeat 640 961 IPR016024 -
Lan14g0513 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 337 IPR013083 -
Lan14g0513 1007 SUPERFAMILY ARM repeat 335 621 IPR016024 -
Lan14g0513 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lan14g0513 1007 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0513 Lan-Chr14 10749079 10754822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0513 264 1007 U-box Gene Family AT1G76390 28.340 2.56e-58 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0513 - - gmx:100818273 1476.84