Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0491 ATGGCTCTTCAACATCGCCTGCACCGCCTTTTGCTTGACCCAGATTCAAGTTCAACTGCACCAGGGAATGCAAATAAGACAAGTGAGTCTTTTTCAGGTAACAAAAGATTTGACACCAACATGGTGATTATCTTGGCAGCTTTGCTTTGTGCACTTATATGTGCTCTTGGACTCAACTCAATTATACGTTGCGCTCTAAGGTGTAGCCGCAGGTTCGCATTTGAGACACCAGATGAGGTTGCGGCTCGCTTAACATCGAAAGGACTAAAGAAGAAAGCATTGCATCAGATCCCTATAGCTGTTTATGGTTCAGGTAGTACTAGTATTGCAGCCACAGAGTGTCCAATTTGCCTTGGGGAGTTTATAAATGGAGAAAAAGTTAGAGTGTTACCAAATTGTCACCATGGATTTCATGTAAGATGCATAGATACATGGCTTCTTTCACACTCCTCTTGTCCTACTTGCAGACACTCTTTGCTTGAACATCCAACAATTTCTGATGCTGCAACTGTGGCTGTTTCTGTAGGAACTAGTCATCAAGTGGAAAATTCCTTAGAAGGACATGAACATGAGCCTTTAGATGTAAGTGTGAATGAGATTGATTAA 606 0.4191 MALQHRLHRLLLDPDSSSTAPGNANKTSESFSGNKRFDTNMVIILAALLCALICALGLNSIIRCALRCSRRFAFETPDEVAARLTSKGLKKKALHQIPIAVYGSGSTSIAATECPICLGEFINGEKVRVLPNCHHGFHVRCIDTWLLSHSSCPTCRHSLLEHPTISDAATVAVSVGTSHQVENSLEGHEHEPLDVSVNEID* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0491 201 PANTHER RING-H2 FINGER PROTEIN ATL74 8 175 - -
Lan14g0491 201 Pfam Ring finger domain 113 156 IPR001841 -
Lan14g0491 201 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lan14g0491 201 SUPERFAMILY RING/U-box 113 163 - -
Lan14g0491 201 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 175 - -
Lan14g0491 201 SMART ring_2 114 155 IPR001841 -
Lan14g0491 201 CDD RING-H2_PA-TM-RING 113 156 - -
Lan14g0491 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0491 Lan-Chr14 10495047 10496716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0491 7 164 C3H Transcription Factor Family AT3G10910 59.763 3.59e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0491 - K19040 gmx:100787273 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0553 15 12754185 12755926 Lan14g0491 14 10495047 10496716 LSH
Lan15g0539 15 12521876 12522715 Lan14g0491 14 10495047 10496716 LSH
Lan12g0677 12 13578051 13578855 Lan14g0491 14 10495047 10496716 PCT
Lan1g1873 1 33908397 33909642 Lan14g0491 14 10495047 10496716 PCT
Lan1g1572 1 26597809 26598552 Lan14g0491 14 10495047 10496716 PCT
Lan14g0491 14 10495047 10496716 Lan12g0677 12 13578051 13578855 PCT
Lan14g0491 14 10495047 10496716 Lan1g1873 1 33908397 33909642 PCT
Lan14g0491 14 10495047 10496716 Lan1g1572 1 26597809 26598552 PCT