Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0407 ATGGCGTCGAAAGGTCCTAGGTATAAGATTGATCATGACACAAAAGCTAAACGGCAAAAGGCGCTTGAAGCTTCAAGGGAGCCTAGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGCGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAACACAGGCGAAGAAAGTTGCTTTAAGAGCTAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGGTAAGAAAAGTCGCATTGAGTATATCCAAAGATGTTAAGAAATTCTGGACGAAAATAGAAAAGCTGGTTCTTTACAAGCACCAAATGGAGCTTGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTCTTGGGGCAAACTGAGAGGTACTCCACAATGTTGGCCGAAAATCTTGTGGATGCTTATAAACCACAAAAGCAGAATTCTCCGGAGCTTCAAATGTGTACAGAATACAAGGATGTAGATGGAGACAATACTAATGAAGCTAAGGAAGTTAATGTTGAAGAATATCCATCAGACGCACCTGACAATGATGAAGAATTTGATGTACAATCTGATGATGAATCGGTGGATGATGAGCGAACCCTTGAGGAAGATGAGGCTCTCATAACTGAAGAAGAAAGAAAAGAGGAATTGGCAGCTTTGCGTGATGAAATTGATCTTCCAATTGAGGAGTTACTAAAACGTTATGCTGAAGAGAAAGGAGAACCAGTAAGGCAAGAAAGTAGTCCAGAGCATAGTAAAGATGCTGGGCAAATAAATAGAGCTGATGATGGTGATGAAAATGGAGATGATATTTTATCTGTCAGCAAAGTTGTCTCTAGCAACTCCAGCATGTTCCCTGGTCGACGTTGTGATGAAAGTAATGGTGATGAAGGTACACAAGCAAGCAATCTATCTCAATATGAGGACCATCCACCTGAAAATACTTGTGAGGTTCCCAGTGAGATGGCCAATGAAAGTATTGTATATGACTTTAATGATGAAGAGGAAGATGCTGACTTCTTGCTTGGAACAGAAGATAAGGATGATGAAACAACCTTATCCGAGGAGGAAAAACTGGAAAGGGTTGACGCAATTGATCCGAGGGATGAGATTGCCTTATTGCACAAGGAGAGTGACATGTCTGTTGAGGAACTCCTTGCAAGGTATAAAAAGGATCTGGGTGATAATGAAGATTGGGAAGATGATTCTGATGCTTCTTCTTTATCAGAGGATCATCGGGATTTGCCAATTCATGAAGAAGCTGGAGCTGATGTTTCTATGAATGAAGATATCAAGTCTGGTGAGCACCTGGTTATTCTACAGTCCCAGACAGAAGAACAATGGGAAGCACCTCCCGAGAATTCCGAAAAAACAGAAAGTGAGTATATAATTGCTGACGCAGCTGCTGCTGCAAGATCAGCACAACCAACGGGAAACACCTTCTCCACAACTAAAGTACGTACAAAGTTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACACATTGGATTGGATTGGCTTGTCACCATGTATGAAAAAAGACTGAATGGAATTTTAGCAGATGAAATGGGGCTTGGAAAAACAATCATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAAGGGGATTTGGGGCCCACATCTAATTGTGGTACCAACAAGTGTAATGCTTAACTGGGAGACTGAATTTTTGAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGAGAAAACATAAAAGACAAGGATGGTTGAAACAAAACTCATTTCATGTATGCATAACAACTTATAGACTAGTTATTCAAGATTCTAAAGTTTTTAAACGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAGAGGTGGCAGACGCTCTTGAATTTTAATTCGAAACGACGTATTCTCTTGACTGGTACACCACTGCAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCATCAAGAGTTTAAGGATTGGTTTTGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAGGTTAATAAGGAGGTTGTTGATCGTCTGCATAATGTCCTTCGTCCATTTCTGCTCCGTCGATTAAAGCGAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATAAATTGTAGATTGTCAAAGAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTCCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGCTCTTTTGATATGTTGGGTATTGATATTCAGTTAAGCTCTTCTGTTTGCTCCATCCTTTTGCCCAGTACCTTTTCTACAGTAGACCTAAGAGGTTTAGGTTTTTTATTTACTCATCTTGACTATAGCATGACTTCTTGGGAAAGTGATGAAATCCAAGCTATTGAGACCCCTACAAGTTTAATCATGGAACGTACTAATGTGGGTGACCTGGAAGTTATTAAGCCTGGACTGAAATCTCAAAAAAAGCTGCAAGGAACAAACATTTTTGAAGAGATCCAAAGAGCAATTTGGGAAGAAAGGTTAAGACAGGCGAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAGAAGACCCATCTACTCAACCACCCTAAGGGATCTTGTTAGCATAAAGCATCCTGTATATGATATTCATCAGGTGAAGGCAAACCCGGTTTCATACTCGTACTCAACAAAGCTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGTTTCATGTTTTCAATCCCAGCTGCACGAGTGCCTTCCCCTGTTTGCTGGTGTAGTAGAATTGAGACACCCGTGTTTTTGGATTCATCTTACAAGCAAAAATGTTCTGAACTTCTGTCACCATTACTGTCACCTATCAGGCCTGCAATTGTCCGTCGGCAAGTGTATTTCCCAGATAGGCGTCTAATACAATTTGACTGTGGGAAACTGCAGGAGCTAGCAATTTTGTTAAGGAAATTAAAATCAGAAGGTCATCGAGCTCTGATATTTACCCAGATGACAAAGATGCTTGATATATTAGAGGCATTCATTAGTTTGTATGGTTATACCTACATGCGATTAGATGGATCAACTCAACCAGAGGAAAGGCAGACCTTAATGCAGCGTTTTAACACAAATCCCAAATATTTTCTTTTCATATTGTCGACCCGTAGTGGGGGTGTTGGTATCAACCTAGTTGGAGCTGACACGGTGATATTTTATGATAGCGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTTAAGAAGCTTGATCCTATTGAACTGTTTTCAGGTCATAGAGCACTTTCTGTAAAAAATATCCAGAAGGAGAAAAACCAGAACAATGGAGAAGCTTCTGTAACCAATGCAGAGGTAGAGGCTGCATTAAAAGATGTAGAAGATGAAGCAGATTATATGGCATATAAGAGAGTTGAGCAGGAAGAAGCTGTGGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGATGATGAGTATGTTAATGAGGATGATATGAAGGATGATGAGCCTGTTGAATTCGGTGAATCTGTTCCCAGTTTAAGTAAAGAGAACTTGTCAATGTTAAATGGTAATGATCCTACGGAAGATAGACCACCCTCTGTTCCTCACAAAGAAGATGATGTTGACATGATTGCTGATGTCAAGCAGATGGCTGCTGCTGCAGCTGCAGCTGGACAAGCAATCACAGTGTTTGAGAGTGAGCTACGTCCTATTGATCGATATGCCATTCGTTTTCTGGAGCAGTGGGATCCAATTATAGATAAAACGACCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCCTTGAAAAGTTTAAGGAGGAAATGGAGGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGTTGGGATGCTGATTTTGCAACTGAGGCATATCGGCAGCAAGTGGAGGCCTTAGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAAACAGAAAGAGAAAGCTGAGGAAGAAAATTGTGATTCTAAAATGACTCAAACACCAAGTGATTCAAAGCCCAAATCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCACTGAAGAAAGGATCATTAACATCTGGCTTGAGATCTGCAAAACAAGAGCCACAAGCGGAAACAATGACTATAGATGATGAGGATGTCAACAGCTTGACTTTTGTTTCTCCAGAGTCAACTTCGCAGAAAAAACGTAAGATGTTGAAGCCAACAACTGATGGTGAAGAAAAAAGACTGAAGAAGTCCAAAAAGATGAAGAGAAAGTCTCCTGACATTTGTGCTTCAGATTTAGATTCCAACTCATTAGTTGTGCTGGATGAACATGCAGAGTCAAAGCTGGGTGAAAGTCTGGTTGATTTTGAACAGAGAATGGCAGGCAGGAGTAAGATGGGAGGAAAAATATCCATTACTCCAATGCCAGTGAAACGGATATTGGTTATAAAACCAGAAAAACTGAAGAAGGGAAATCTTTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGTTGCCTCAAGAAGATGCAATATTATGTGCCATAGTTCATGAATATGGTTCTAACTGGAATTTGGTTAGCGAAACACTTCATGGCATGACTGCAGGGGGGACATTTAGGGGGAGATATCGCCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAGCTATTCCAAAAATATGTCTTGCACTCGACCGACAATGCAAATCATGAGAAGATCAGCAATACTGGCTCCGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGCCAAACAGAGAGTTATTACTGCAGAAACATTTTTTTGCATTGCTGTCATCTGTCTGGAAGGTGTCAGCACATGTTGACCGCAGGCAAAATCCATCACCTACTTGTAATGGTCTCTATTTTGATCAGAGTTTCTTTACTTCCAAATGCCAACAATCACAGAATTCCTTGAAGAAACCCTCTGGAAGGATGATGTTTACTAATTTGGCCCAGAGCAAGAAATTAATAGCTGCTGCACTTGATGACACAATAAGTAGGCCAGAGAGTGACAAAATCCTCCTCTCTAATCAGGGTGAAGACATGCCATTGAATGCAGATAAGCTGGATATAACATTGGAGTTCCAGAAAGAGGAGAGTGATGTCTTATCTTCATTTCCATCTGTTATAAATTTATCAATAGATGGGATTGAAGCATCGCCATCTTTAAATAAACAAACTGGAGAATGTGACCATCTCAGAGGTTGTTTGTCTGCTGCTGAGAATCGTTTCAGGGAGGCATCAAAAACTTGTGAGGAAGACAGTTCTGGATGGGCTTCATCAGCATTCCCGACAAACGATTCAAGGTCTCAACCTGGATCCAGGATACAATCCTTGGGAAAGCAAAAAACTCTAATCTGTGACACTACTAAGCCGTCTAAGTCGAAGTCGAAAAGAGTTTCAATGGATCCCAGTGACATGCAACAGGCTGAGCCATCACTCCAGTCAATGCCACCACTTAAGGAACTGAGGTTTGATCTTACTGCATCCACTATGGACATAGTTGGAATTGATGATAGGGATACCAATCCCCCCTTTGGTTTGCATTTGGAAAATTCATTTGAAAGGGAGAGTTCTGAAGCTATCCCACATGATTATCTAGATGGTTTAATCTTTGGCCTTGATGATTTGATTGAATTCCCTGAATACACTGACATTAGATAG 6138 0.4076 MASKGPRYKIDHDTKAKRQKALEASREPRRPKTHWDHVLEEMAWLSKDFESERKWKLTQAKKVALRASKGMLDQATRGEKKMKEEEQRVRKVALSISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAYKPQKQNSPELQMCTEYKDVDGDNTNEAKEVNVEEYPSDAPDNDEEFDVQSDDESVDDERTLEEDEALITEEERKEELAALRDEIDLPIEELLKRYAEEKGEPVRQESSPEHSKDAGQINRADDGDENGDDILSVSKVVSSNSSMFPGRRCDESNGDEGTQASNLSQYEDHPPENTCEVPSEMANESIVYDFNDEEEDADFLLGTEDKDDETTLSEEEKLERVDAIDPRDEIALLHKESDMSVEELLARYKKDLGDNEDWEDDSDASSLSEDHRDLPIHEEAGADVSMNEDIKSGEHLVILQSQTEEQWEAPPENSEKTESEYIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKQNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVINCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMLGIDIQLSSSVCSILLPSTFSTVDLRGLGFLFTHLDYSMTSWESDEIQAIETPTSLIMERTNVGDLEVIKPGLKSQKKLQGTNIFEEIQRAIWEERLRQAKERAAAIAWWNSLRCKRRPIYSTTLRDLVSIKHPVYDIHQVKANPVSYSYSTKLADIVLSPVERFQKMTDVVESFMFSIPAARVPSPVCWCSRIETPVFLDSSYKQKCSELLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPIELFSGHRALSVKNIQKEKNQNNGEASVTNAEVEAALKDVEDEADYMAYKRVEQEEAVDNQEFTEEAIGRLEDDEYVNEDDMKDDEPVEFGESVPSLSKENLSMLNGNDPTEDRPPSVPHKEDDVDMIADVKQMAAAAAAAGQAITVFESELRPIDRYAIRFLEQWDPIIDKTTLESEVRIEDTEWELDRLEKFKEEMEAEIDEDEEPLVYESWDADFATEAYRQQVEALAQHQLMEELEYEAKQKEKAEEENCDSKMTQTPSDSKPKSKKKPKKAKFKSLKKGSLTSGLRSAKQEPQAETMTIDDEDVNSLTFVSPESTSQKKRKMLKPTTDGEEKRLKKSKKMKRKSPDICASDLDSNSLVVLDEHAESKLGESLVDFEQRMAGRSKMGGKISITPMPVKRILVIKPEKLKKGNLWSKDCIPSADFWLPQEDAILCAIVHEYGSNWNLVSETLHGMTAGGTFRGRYRHPVHCCERFRELFQKYVLHSTDNANHEKISNTGSGKALLKVTEDNIRMLLDVASEQPNRELLLQKHFFALLSSVWKVSAHVDRRQNPSPTCNGLYFDQSFFTSKCQQSQNSLKKPSGRMMFTNLAQSKKLIAAALDDTISRPESDKILLSNQGEDMPLNADKLDITLEFQKEESDVLSSFPSVINLSIDGIEASPSLNKQTGECDHLRGCLSAAENRFREASKTCEEDSSGWASSAFPTNDSRSQPGSRIQSLGKQKTLICDTTKPSKSKSKRVSMDPSDMQQAEPSLQSMPPLKELRFDLTASTMDIVGIDDRDTNPPFGLHLENSFERESSEAIPHDYLDGLIFGLDDLIEFPEYTDIR* 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0407 2045 CDD SF2_C_SNF 1041 1176 - -
Lan14g0407 2045 SMART bromneu2 23 94 IPR014012 -
Lan14g0407 2045 ProSiteProfiles HSA domain profile. 22 96 IPR014012 -
Lan14g0407 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 1228 IPR027417 -
Lan14g0407 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 733 IPR027417 -
Lan14g0407 2045 Pfam Helicase conserved C-terminal domain 1055 1165 IPR001650 -
Lan14g0407 2045 SUPERFAMILY Homeodomain-like 1642 1704 IPR009057 -
Lan14g0407 2045 Gene3D - 1025 1271 IPR027417 -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1458 1566 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1 33 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 250 283 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1500 1536 - -
Lan14g0407 2045 Gene3D - 1640 1701 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1287 1302 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1458 1472 - -
Lan14g0407 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1056 1206 IPR001650 -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1913 1949 - -
Lan14g0407 2045 SMART ultradead3 507 700 IPR014001 -
Lan14g0407 2045 Gene3D - 479 757 IPR038718 -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 309 323 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 189 223 - -
Lan14g0407 2045 PANTHER HELICASE SRCAP 13 1945 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1311 1325 - -
Lan14g0407 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 688 IPR014001 -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 169 188 - -
Lan14g0407 2045 PANTHER HELICASE SRCAP-RELATED 13 1945 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1913 1971 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 355 374 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 407 429 - -
Lan14g0407 2045 Coils Coil 1396 1416 - -
Lan14g0407 2045 Gene3D - 758 833 - -
Lan14g0407 2045 Pfam SNF2-related domain 528 800 IPR000330 GO:0005524|GO:0140658
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1537 1555 - -
Lan14g0407 2045 Coils Coil 1447 1467 - -
Lan14g0407 2045 CDD DEXQc_SRCAP 511 733 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 1285 1335 - -
Lan14g0407 2045 Pfam Myb-like DNA-binding domain 1644 1699 - -
Lan14g0407 2045 SMART helicmild6 1082 1165 IPR001650 -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 286 301 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 250 331 - -
Lan14g0407 2045 MobiDBLite consensus disorder prediction 169 227 - -
Lan14g0407 2045 Pfam HSA domain 27 93 IPR014012 -
Lan14g0407 2045 ProSiteProfiles Myb-like domain profile. 1644 1697 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0407 Lan-Chr14 8953370 8982466 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0407 531 803 RAD5 or RAD16-like Gene Family AT5G43530 30.124 1.85e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan14g0407 SNF2_N 1.5e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0407 - - gmx:100794898 3157.08