Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0379 ATGCCTTTCGAAATAACGGACCGGAGGGATGTTTCAGCCACATCCAACTTTTTTGGTGATATTTCCTTTTCTCCCGAGAGGAATGTTGGATTACAGAAGCTAAAATCCATTCATGACAACTACCCCCAAGGGAAGAGTGAAATGGAAGCATCTCCCGGCAGCATTTTGAGTGCTTCGTTGCCCCTTAAAATAAATGCAGGAATTGGCTTTGTAATGCCCCAGACTAGTCTATCTAGGGAAATTACAGAAAACCAACATTTTGGTGGAGAAGAAGGCATTGCAGGTGTGCTGAAGGATTCCCAGGAAAGACTTAATTATAATCCAAGATCATGGTCTGATGTGCGCATGCAACCAGCATCTGGCTCATATGGTTTAATCGGGAACAAGATTATCACGAATGTGGTCTCTCATGAAAGCAGTCTATTCTCAAGCTCGCTGTCTGATATATTTAGCAAAAAGTTGAGGTTATCGAGTAATGGTGCTCTGCTTGATCAGCCCATTAATGTTGGTTCCCTTCATGAGGAAGAGGCATATAAGTCTCTCGAAGAAATTGAGGCTGACACTATTGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGCGTCGATGGCGAGTTAGGAGGCAGTGCGCATGCTAGAACAAGTGACGATTTTGAAGACTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGCTCATCTGGTTTCAGAAAAAAGAACCAGTTGCATGAGTGCAGATCTTGGTCACTATAATAAAGGAAAACATCCTTTTGGTGAACAGTCTTATAGAACACTTTTCGTTAGAAACATTAATAGTAATGTTGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGTGATATCAGGACCATGTATACTGCCGGCAAGCATCATGGGTTTGTTATGATTTCTTATTATGACCTTAGGGCTGCACAAAATGCAATGAAAGCACTCCAAAATATGTCATTGAAGTCTAGGAATCTCGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGACAAGGATATTGGCCATGGCTCACTGGTGATATCTGGTCTTGATTCATCTGTTTTGAATGATGAACTTCAAAATATTTTTGGATTTTATGGAGAAATTAAAGGCATCTTTGATTCTCCAGAAATGGATCATATCAAATTTATTGAGTTTTATGATGTACGAGCTGCAGAAGCTTCTCTTCGAGGATTAAACAAGATCTTCATTGCTGGAAAGCAGATCAATCTGGAACCTTTCCATCCTAGGATTACAGCATGTCTGCTGCAGCAGTCTCAGAAAGGACAAGATGAACCAGATATCGGTCATAATCTTAACGGCAATTTATTAGTCAGACAGAAGGCAACATTGTCTTCTGGAGCTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCAGGGATTTCAATCTGCGACAAAGCTACCTTTGAATGCTTATATTGATAATAACACATTATTTCCTGTGAATTCTGGCATTCACAAGACAGCAAGAGGAGCATCTACTGGAAAATCATTTGGTGTTTGTGAGTCCAGTAATGCTGTTGATGCAATGAAATTTGCGTCTATTCCTGGACTCCATCCGCATTCTTTACCTGAGTATCATGGTAGTTTACCTAATGGTGGTCCTTACAACTTTTCAAGCACCATTAGCAACATGGCTCCCAGTATTGGTACTGGGTCGGCAGAAGTGTCTGGCAGTATGCACATTCAGGGAATGGGCTCAACTGGGAATGTAGCCGAATTTAGTGCACGAGGAAACAGTAGTCGCCCACATGGACTTTATCATATGTGGAACACCTCCAACTTGCATCAGCAACACCCATCAAATGCCATGCTTTGGCCGAAGACACCATCCTTTGTTAATGGTGCTGGTAGTCCATGTATTCCACAGATGCCCAGCTTTCCCGGAACACCGTCTCATATGCTGAGAGCAACACATGTAGACCACCATGTTGGATCAGCACCAGTTGTTACCGCCTCACCATGGGAAACACAACGTTCTTACTTGGGAGAGTCTCCTGAAGCCTCTGGTTTTCGATTGGGTTCTCTTGGAAGTGCAGGTTTTCATGATCCCTGGCAGTTGCAACAACCAGATTTTTCTTCTCGCAACATGTTTTCTCATGTTGGTGGGAATGGTACCGAATTGATGTCCAATGCTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTCCCCGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATACTATCAATGAAAGAATGAGAAATCTCTATAATCGTAGAAGTGAAGCAAACACTAACAATGCTGACAAAAAACAATTTGAACTTGACCTAAGCCGAATACTGCGTGGGGAAGACAGCCGAACCACGCTTATGATAAAAAATATTCCTAACAAGTATACGTCAAAGATGCTTCTTGCTGCCATTGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGCTCAAATTATTCCATTCCACCAGGCTTTCCATGGAAAGAAATGGGAGAAGTTTAACAGTGAAAAGGTTGCCGTACTTGCATATGCCCGAATTCAAGGAAAATCTACTCTTGTTGCTCATTTCCAGAATTCAAGCTTGATGAATGAGGATAAACGTTGCCGCCCTATCCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTTCCCTTGGGTAACAATATTAGACTAAGGCCTGGAAAATCTCGCACTAGTGCTAGTGAGGAGAATCGCGGCCAAGGGAATCCTTCAACTTCGGCAAGTGGAGAGGAGTCTACTAATGGAATAGAGTCATCAAGAAACTCTGACTAA 2904 0.4225 MPFEITDRRDVSATSNFFGDISFSPERNVGLQKLKSIHDNYPQGKSEMEASPGSILSASLPLKINAGIGFVMPQTSLSREITENQHFGGEEGIAGVLKDSQERLNYNPRSWSDVRMQPASGSYGLIGNKIITNVVSHESSLFSSSLSDIFSKKLRLSSNGALLDQPINVGSLHEEEAYKSLEEIEADTIGNLLPDEDDLFSGVDGELGGSAHARTSDDFEDFDLFSSGGGMELEGDAHLVSEKRTSCMSADLGHYNKGKHPFGEQSYRTLFVRNINSNVEDSELKALFEQYGDIRTMYTAGKHHGFVMISYYDLRAAQNAMKALQNMSLKSRNLDIHYSIPKGNAPDKDIGHGSLVISGLDSSVLNDELQNIFGFYGEIKGIFDSPEMDHIKFIEFYDVRAAEASLRGLNKIFIAGKQINLEPFHPRITACLLQQSQKGQDEPDIGHNLNGNLLVRQKATLSSGAASGGSLENGYNQGFQSATKLPLNAYIDNNTLFPVNSGIHKTARGASTGKSFGVCESSNAVDAMKFASIPGLHPHSLPEYHGSLPNGGPYNFSSTISNMAPSIGTGSAEVSGSMHIQGMGSTGNVAEFSARGNSSRPHGLYHMWNTSNLHQQHPSNAMLWPKTPSFVNGAGSPCIPQMPSFPGTPSHMLRATHVDHHVGSAPVVTASPWETQRSYLGESPEASGFRLGSLGSAGFHDPWQLQQPDFSSRNMFSHVGGNGTELMSNAGQGSPKQLSHVFPGRLPMTSMSKFDTINERMRNLYNRRSEANTNNADKKQFELDLSRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSTLVAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRLRPGKSRTSASEENRGQGNPSTSASGEESTNGIESSRNSD* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0379 967 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 961 - -
Lan14g0379 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 341 IPR000504 GO:0003723
Lan14g0379 967 MobiDBLite consensus disorder prediction 929 967 - -
Lan14g0379 967 Pfam RNA recognition motif 2 795 891 IPR007201 -
Lan14g0379 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 334 IPR000504 GO:0003723
Lan14g0379 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 419 IPR000504 GO:0003723
Lan14g0379 967 CDD RRM1_MEI2_like 268 342 IPR034453 -
Lan14g0379 967 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 961 - -
Lan14g0379 967 SMART rrm1_1 354 422 IPR000504 GO:0003723
Lan14g0379 967 SMART rrm1_1 797 875 IPR000504 GO:0003723
Lan14g0379 967 SMART rrm1_1 269 337 IPR000504 GO:0003723
Lan14g0379 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 426 IPR000504 GO:0003723
Lan14g0379 967 Gene3D - 259 351 IPR012677 -
Lan14g0379 967 SUPERFAMILY RNA-binding domain, RBD 797 882 IPR035979 GO:0003676
Lan14g0379 967 Gene3D - 352 444 IPR012677 -
Lan14g0379 967 CDD RRM3_MEI2_like 798 883 IPR034454 -
Lan14g0379 967 MobiDBLite consensus disorder prediction 906 967 - -
Lan14g0379 967 SUPERFAMILY RNA-binding domain, RBD 266 425 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0379 Lan-Chr14 8249290 8257900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0379 264 424 Eukaryotic Initiation Factors Gene Family AT1G49760 24.118 2.23e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0379 - - aprc:113865455 1413.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0470 15 11022898 11031430 Lan14g0379 14 8249290 8257900 LSH
Lan12g0737 12 14588054 14596435 Lan14g0379 14 8249290 8257900 PCT
Lan14g0379 14 8249290 8257900 Lan12g0737 12 14588054 14596435 PCT