Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0347 ATGTCTATCACTTCCTTCAATATGTCACACTCTTCCCTTCTCTCTTCCCCTTCCTCACTTTTCCACAACACCAAAACCAAACACTACTTTCTCACTATCCCATTATCCAAACAACTCTCATGCTTCAAAAACCCTTCGCTATCTCTCACCGTCGCCACCAAAACGCACCGTTTCCCCTTCCTTGCATTCGTGGCGCAGACTTCGGACTGGGCCCAACAGGAGGACAAGGACAGCACATTTACATTTGAAGACCAGGAAGTTGGTGAAACTGAAGCCGGCCTTTCAGGTTTGGAGCCCAATGCCGAAGACGCCGAAGGAGAAGGAGAAGGTGCTGGTGAAGAAGAAGAAGAAGAAGAAGGGGAGTTTGAGGAGGGTGGTTTTCCGGAACCACCGGAAGAGGCCAAGCTTTTTGTTGGAAACTTGCCTTATGATGTTGATAGTCAGAAATTGGCTATGCTTTTTGAGGAAGCTGGAACCGTTGAAGTTGCTGAGGTTATTTTTAATAGGGATACCAATCAGAGTCGCGGGTTCGGGTTTGTGACCATGAGTACAGTTGAAGAAGCTGATAATGCTGTGGAGAAGTTCAACCGCTATGACTTAGATGGAAGACTATTGACTGTTAATAAGGCTTCTCCAAGAGGATCTAGGGCTGAACCTCCACCTCGTAACTTTGAAGCTGGCTCAAGAGTCTATGTCGGTAATTTGCCATGGGATGTGGATAATAATCGCCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGAATGCTCGGGTTGTCTATGACAGAGAGACTGGCCGATCACGTGGCTTTGGCTTTGTCACATTTTCTGATGAGACTGAAATGAATGACGCCATTGCTGCTCTCGATGGTCAGAGTTTGGAGGGGAGGGCAATCAGAGTGAATGTTGCTGAGGACAGGCCGAGGCGCAGCTCCTTTTAA 942 0.4735 MSITSFNMSHSSLLSSPSSLFHNTKTKHYFLTIPLSKQLSCFKNPSLSLTVATKTHRFPFLAFVAQTSDWAQQEDKDSTFTFEDQEVGETEAGLSGLEPNAEDAEGEGEGAGEEEEEEEGEFEEGGFPEPPEEAKLFVGNLPYDVDSQKLAMLFEEAGTVEVAEVIFNRDTNQSRGFGFVTMSTVEEADNAVEKFNRYDLDGRLLTVNKASPRGSRAEPPPRNFEAGSRVYVGNLPWDVDNNRLEQIFSEHGKVENARVVYDRETGRSRGFGFVTFSDETEMNDAIAALDGQSLEGRAIRVNVAEDRPRRSSF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0347 313 CDD RRM_HP0827_like 135 212 - -
Lan14g0347 313 CDD RRM_HP0827_like 229 305 - -
Lan14g0347 313 MobiDBLite consensus disorder prediction 102 127 - -
Lan14g0347 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 300 IPR000504 GO:0003723
Lan14g0347 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 205 IPR000504 GO:0003723
Lan14g0347 313 PANTHER OS02G0815200 PROTEIN 3 313 - -
Lan14g0347 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Lan14g0347 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Lan14g0347 313 SMART rrm1_1 135 208 IPR000504 GO:0003723
Lan14g0347 313 SMART rrm1_1 229 302 IPR000504 GO:0003723
Lan14g0347 313 SUPERFAMILY RNA-binding domain, RBD 130 224 IPR035979 GO:0003676
Lan14g0347 313 MobiDBLite consensus disorder prediction 80 134 - -
Lan14g0347 313 PANTHER RIBONUCLEOPROTEIN 3 313 - -
Lan14g0347 313 Gene3D - 216 312 IPR012677 -
Lan14g0347 313 Gene3D - 65 215 IPR012677 -
Lan14g0347 313 SUPERFAMILY RNA-binding domain, RBD 220 311 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0347 Lan-Chr14 7116193 7118817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0347 136 310 Eukaryotic Initiation Factors Gene Family AT3G16380 36.170 1.32e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0347 - - gmx:100790280 390.578