Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0248 ATGACTACTACTCCCTCTTCTCTCGACCACGCTCTTCGCGATGTACAAGACTACGTTTCGGCAAATGAACCAGAAGGTTTGGCATGGGATACATTTCGTGATGTTTACGAGCTTGTGCAAAATGGAAATGCAGCATTTCGTGAGAACATAATGGAAGAGGCAATCAGCTTTTACTCAAGGGCCAATAACATCAAATATGGGGATCCCATCATCCTGAGCAATCGAAGTGCAGCTTATATTAGGATTAGTCAATATTTAAAGAACAGAGCTCCATCAGCTTCAGAACATAGACCATTGAGTGGGCTTGATCCTACAACACTTGCTGAATTGGGTTTGAAGGATGCTGATAAACTTGTTGAACTCCAAACTAATTCAGTAAAATCATACATTTTAAAAGCTAATGCTTTATTTCTGTTGGATAAATATGCGGAGGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCATTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGAGAGTCATGCAGATCAACTGGCTCAAATATGCATGAACAACCAGATCGTAATGATGACTTCGATTGCACTCTTTGCCTGAAGTTACTGCACGAACCTGTTACAACTCCTTGCGGACACTCTTTTTGCCGATCATGTCTATTTCAATCAATGGATCGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACGTGTTCCATCAGTGTGACATTGCAGAACATCATACAAAAGAACTTTCCAGAAGAATATGCTGAACGCAAGAAAGAGCATGATAGTTTAATCAACTTTGGTGTAGATTTACTCCCTCTTTTTGTAATGGATGTTGTCATCCCATGCCAAAAGTTTCCACTCAATATATTTGAACCTCGGTATAGACTAATGGTACGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATTGAGTCTTCAACAGGTTCCTTAGCCGAGTATGCTTGTGAAGTTGAAATCACAGAGTGTGAGCCACTTCCAGATGGTCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATCATCCATTCTTGGGATCAAGATGGATATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCGCCAGAAGGGACAAGTGAAAGCGAGACATTATTGGAATTAACACATAACGCATCAGAAAGTGTCCAATCATGGATAAGAAGAGCTAAAGAAGCAGCAAGACTAGATCAAAGACGCCTTGAGAGACTCGTGAGTGTTGAAGCGATGATGCCATCACCTCGTGATCCCGAGCGCTTCAGTTTTTGGCTGGCTACCCTGTCCAATCGGAGGCCGTCGGAAAGATTGGATCTCCTACGCATAAGAGATACTACTGAGAGGATTAGACGAGGCCTGATTTTTCTCCGAGCAGAGGAACAAGGCTGCAGAATTCAATAA 1452 0.4201 MTTTPSSLDHALRDVQDYVSANEPEGLAWDTFRDVYELVQNGNAAFRENIMEEAISFYSRANNIKYGDPIILSNRSAAYIRISQYLKNRAPSASEHRPLSGLDPTTLAELGLKDADKLVELQTNSVKSYILKANALFLLDKYAEARDVILSGLQVDPFSNSLRASLQNLERESCRSTGSNMHEQPDRNDDFDCTLCLKLLHEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLQNIIQKNFPEEYAERKKEHDSLINFGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVIIESSTGSLAEYACEVEITECEPLPDGRFYIEIESRRRFRIIHSWDQDGYRVAEVEWIQDIMPPEGTSESETLLELTHNASESVQSWIRRAKEAARLDQRRLERLVSVEAMMPSPRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0248 483 Gene3D - 275 377 IPR046336 -
Lan14g0248 483 SUPERFAMILY RING/U-box 187 256 - -
Lan14g0248 483 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 11 476 - -
Lan14g0248 483 Pfam ATP-dependent protease La (LON) substrate-binding domain 277 473 IPR003111 -
Lan14g0248 483 SUPERFAMILY PUA domain-like 277 473 IPR015947 -
Lan14g0248 483 SMART ring_2 193 230 IPR001841 -
Lan14g0248 483 SUPERFAMILY TPR-like 34 167 IPR011990 GO:0005515
Lan14g0248 483 Pfam Zinc finger, C3HC4 type (RING finger) 193 230 - -
Lan14g0248 483 ProSitePatterns Zinc finger RING-type signature. 208 217 IPR017907 -
Lan14g0248 483 Gene3D Tetratricopeptide repeat domain 33 172 IPR011990 GO:0005515
Lan14g0248 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 271 IPR013083 -
Lan14g0248 483 PANTHER RING FINGER PROTEIN 127 11 476 - -
Lan14g0248 483 Gene3D - 402 475 - -
Lan14g0248 483 ProSiteProfiles Zinc finger RING-type profile. 193 231 IPR001841 -
Lan14g0248 483 ProSiteProfiles Lon N-terminal domain profile. 274 475 IPR003111 -
Lan14g0248 483 SMART lon_5 276 475 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0248 Lan-Chr14 2729389 2748213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0248 182 234 C3H Transcription Factor Family AT1G74990 37.500 1.56e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0248 - - gmx:100802277 774.622