Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0242 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGATAATGCTTCTTATGCTAACAATGCCGGATCAGGTAACAACACTTCAGCTCCTCCTTCCCGACCAGCTTATGTGCCTCCACATCTGAGGAACCGTCCGCCTCCAACAGCTGAATCCCCTGCTCCTCCTCCTGCACGTACCGGCCCTGCTTCCGGTTCTGGTACTGGTACTGGTACTGGTACTGGTAGGTGGTCTGCTCCTAGAAATGAATACCGTTCTGGGACTGGTGGCAGTGGCCACACAAGCGGATGGGGGAACAAAAGTGCCGGATGGGACCGTGGCAGGGATCGTGAAGTCAACCCCTTTGCGGACCAGGATGATTCTGAACCGGCATTCACTGATCAGGAGAATACTGGAATAAATTTTGATGCATATGAAGACATTCCGGTTGAGACCACTGGTGAAAATGTTCCTCCTCCTGTCAACACATTTGCAGAGATTGACTTGGGTGAAGCGCTCAATGAGAATATAAGAAGGTGCAAATATGTGAGGCCAACACCTGTTCAACGTAATGCCATACCGATATCCCTTGCAGGACGGGATTTGATGGCTTGTGCCCAGACTGGTTCTGGAAAGACTGCTGCTTTTTGTTTCCCAATCATCAGTGGGATTATGAGGGGCCAGCCCATGCAGAGGCCACCTCGTGGTGTGCGTACTGTGTACCCACTAGCCCTTGTTCTCTCACCAACTAGGGAGCTGTCAATGCAAATACATGAAGAGGCTAGAAAGTTTTCATACCAAACCGGGGTTAGGGTTGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGGGATCTGGAGAGAGGGGTGGACATTCTTGTAGCAACTCCAGGTAGACTGGTAGATTTGCTGGAAAGGGCTAGAGTTTCACTACAGATGATCAGATATCTAGCCTTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCCCAGATAAGGAAAATTGTGGAACAGATGGACATGCCCCCACCAGGTGATAGACAGACTATGCTGTTCAGTGCCACATTTCCAAGAGAAATACAGAGATTAGCAGCTGATTTCCTTTCAAACTATATTTTTTTGGCTGTTGGAAGAGTGGGCTCGAGTACTGATTTAATTGACCAGAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCATCTCATGGACCTTCTTCATGCACAGAGGGAAAATGGTGTCCAAGGAAAGCAAGCTTTAACTTTAGTCTTTGTGGAGACAAAGAAGGGAGCTGATGCACTGGAGCACTGGTTGTATCTAAACGGTTTTCCAGCAACCACTATTCACGGTGACAGAACACAACAGGAAAGAGAATTCGCGTTGAGGTCATTTAAAAGTGGCAACACCCCTATATTGGTCGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCCAATGATATCGATGATTATGTGCACCGTATTGGAAGGACAGGTCGAGCAGGAAAGAAAGGTCTCGCCACTGCATTCTTTAATGACAACAATGCAAACCTAGCAAGGTCTTTGGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCATGGCTTTCACGTTATGCTGCTCGGTCTTCCTTTGGTGGAGGAAGGAACCGTCGATCAGGAGGAGGAGACCGTTTTGGAGGCCGTGACTTTCGAAGAGAAGGTTCTTTCAGTAGGGGTGGTGGTTCTGATTACCATAGTGCTGGAAACAGTGGTGGTGGATATGGAGCATCTGGTGGTTACGCTGGAGGATACGGCGGTCCTGGGGTAACTAGTGCATGGGACTGA 1857 0.4847 MRTSWADLAANSAADNASYANNAGSGNNTSAPPSRPAYVPPHLRNRPPPTAESPAPPPARTGPASGSGTGTGTGTGRWSAPRNEYRSGTGGSGHTSGWGNKSAGWDRGRDREVNPFADQDDSEPAFTDQENTGINFDAYEDIPVETTGENVPPPVNTFAEIDLGEALNENIRRCKYVRPTPVQRNAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPMQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGDRQTMLFSATFPREIQRLAADFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRENGVQGKQALTLVFVETKKGADALEHWLYLNGFPATTIHGDRTQQEREFALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNANLARSLADLMQEANQEVPAWLSRYAARSSFGGGRNRRSGGGDRFGGRDFRREGSFSRGGGSDYHSAGNSGGGYGASGGYAGGYGGPGVTSAWD* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0242 618 Pfam DEAD/DEAH box helicase 180 361 IPR011545 GO:0003676|GO:0005524
Lan14g0242 618 SMART helicmild6 430 511 IPR001650 -
Lan14g0242 618 MobiDBLite consensus disorder prediction 34 61 - -
Lan14g0242 618 MobiDBLite consensus disorder prediction 555 593 - -
Lan14g0242 618 MobiDBLite consensus disorder prediction 565 582 - -
Lan14g0242 618 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Lan14g0242 618 MobiDBLite consensus disorder prediction 104 118 - -
Lan14g0242 618 MobiDBLite consensus disorder prediction 1 129 - -
Lan14g0242 618 MobiDBLite consensus disorder prediction 1 33 - -
Lan14g0242 618 Gene3D - 112 374 IPR027417 -
Lan14g0242 618 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 550 IPR001650 -
Lan14g0242 618 CDD DEADc_DDX3_DDX4 157 378 IPR044763 GO:0003724|GO:0005524
Lan14g0242 618 CDD SF2_C_DEAD 384 520 - -
Lan14g0242 618 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 372 IPR014001 -
Lan14g0242 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 527 IPR027417 -
Lan14g0242 618 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 585 - -
Lan14g0242 618 Pfam Helicase conserved C-terminal domain 396 511 IPR001650 -
Lan14g0242 618 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 58 585 - -
Lan14g0242 618 Gene3D - 375 554 IPR027417 -
Lan14g0242 618 MobiDBLite consensus disorder prediction 64 99 - -
Lan14g0242 618 SMART ultradead3 175 387 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0242 Lan-Chr14 2666095 2671049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0242 154 543 Eukaryotic Initiation Factors Gene Family AT3G19760 31.458 1.56e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0242 K11594 - gmx:100795756 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0006 15 44886 49859 Lan14g0242 14 2666095 2671049 LSH