Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0228 ATGGAGTGGAATTCAAAGTCACTGGGGCAATGGGACTGGGAGGAGCACTTACTCTTCTTCAATGGAAAGGCTTCAGAAAATCCAAAGTTACAATCAACAGATTTGAGTGCTGAAGCAGATAAAGAAATCAATGTTGGTCTGTTCTACCCATCAGGGGGTATTGGTTGTTCCAAGTCTGAACTAATACATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCATCAATTCATCATCGAGTGAGGATAGCAAAATATCTATGTTCACATTGGAAGGTTCTCAAGATGATGACTATAGTGGTAAGAAAGAATTGTCCAAAGAAGAGCCAGTTGAAACTTCTCCAGTTCTAGAACCTTCTTCTGCCTCTGGCGAACCATTGCTCACTCTAAAGCTTGGTAAAAGGTTGTACTTTGAGGATGTTTGTGCAGGAAGTGATTCCAAGAGACCATCTTCAAGTACTGGAAGGAAATGCAAATCCAATGGTCAGAACTTGCAACATCCAAGCTGCCAGGTGGAGGGCTGTGGCCTTGATCTCTCATCTGCGAAGGACTACCATCGCAAACATAGAGTTTGTGAAAATCATTCCAAATTCCCTAAGGTGATTATAGCTGGATCGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTGTCAGAATTTGATGATAAAAAGAGAAGCTGCAGGCGACGCCTTTCTGATCACAATGCAAGGCGCCGCAAACCTCATCCTGAAACAGTCCAATTAAAGACATCGGCTTTGTCTTCATCACCCTATGATAGGAGGCAACTAATGATCCCATTTGCATATTCAAGGACTGCTACAAATTTAGCCTGGCAAGACATACACAGTAGCAATCTCCCACAGACAAAAGATTTTCTCATGAAGCCTGCAAAAGCCTTCAATAAGATACCAAGTGCTGTCACTATGCTTTCTGATGATTCCAGTGGCTTTCTTACATCTAAAGGCATAGCAACCAAGAGTATTATTACAGGTATAGAAGATCCCATTGTCTCTTCTGATATGAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATCATGGGATGCTGCATATGAGACCAAGTCCTTCTCCACTCATCACCCCATAACAACTCATGCAATGTCTCATCATCCCTTACCTTTTGCTTCATCAGAATACTGGAACACTGATCAGCAACCAGTCAATTCCAGCATGTGTATCTCCTCATACTCGGATTTTGATAATAGCAATCGATTTCAAGACTTTCAGCTGTGGAATACACCCTATGAATCTGGTTTTCCTTGCAACCAGCTGGATTAA 1323 0.4225 MEWNSKSLGQWDWEEHLLFFNGKASENPKLQSTDLSAEADKEINVGLFYPSGGIGCSKSELIHASSSRSSKSASINSSSSEDSKISMFTLEGSQDDDYSGKKELSKEEPVETSPVLEPSSASGEPLLTLKLGKRLYFEDVCAGSDSKRPSSSTGRKCKSNGQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCENHSKFPKVIIAGSERRFCQQCSRFHDLSEFDDKKRSCRRRLSDHNARRRKPHPETVQLKTSALSSSPYDRRQLMIPFAYSRTATNLAWQDIHSSNLPQTKDFLMKPAKAFNKIPSAVTMLSDDSSGFLTSKGIATKSIITGIEDPIVSSDMNATQDVNRALSLLSTNSSWDAAYETKSFSTHHPITTHAMSHHPLPFASSEYWNTDQQPVNSSMCISSYSDFDNSNRFQDFQLWNTPYESGFPCNQLD* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0228 440 MobiDBLite consensus disorder prediction 145 165 - -
Lan14g0228 440 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 439 IPR044817 GO:0003677
Lan14g0228 440 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 19 439 - -
Lan14g0228 440 MobiDBLite consensus disorder prediction 143 165 - -
Lan14g0228 440 MobiDBLite consensus disorder prediction 84 123 - -
Lan14g0228 440 MobiDBLite consensus disorder prediction 95 110 - -
Lan14g0228 440 Gene3D - 159 230 IPR036893 GO:0003677|GO:0005634
Lan14g0228 440 ProSiteProfiles Zinc finger SBP-type profile. 166 243 IPR004333 GO:0003677
Lan14g0228 440 Pfam SBP domain 169 242 IPR004333 GO:0003677
Lan14g0228 440 SUPERFAMILY SBT domain 167 248 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0228 Lan-Chr14 2570069 2576141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0228 1 376 SBP-box Gene Family AT5G43270 41.206 2.24e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan14g0228 SBP 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0228 - - lang:109328770 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0025 15 168647 174511 Lan14g0228 14 2570069 2576141 LSH
Lan14g0228 14 2570069 2576141 Lan3g1427 3 25881741 25884696 LSH