Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0224 ATGAGTTTTGTTAAAACCCTATTGTTTTGCTTGAACCTCGTTCCAGAAGAAGAAGCAGCCGCAGAAAGCATGGTGAAATACTCGAGAGAACCAGACAATCCCACCAAGTCTTGCAAGGCTAGAGGTGCCGACCTCAGAGTCCATTTCAAGAATACAAGGGAGACTGCCTTTTCCATTAGGAAGTTGCCCCTTGTTAAGGCTAAGAGGTATTTGGAGGACGTTTTGGCCCACAAACAGGCCATTCCTTTCCGACGCTTCTGCCGTGGTGTTGGCAGGACTGCTCAGGCAAAGAACAGGCATTCTAATGGACAAGGACGCTGGCCTGTCAAATCTGCTAAGTTCATCTTAGATTTGCTTAAGAATGCCGAGAGTAACGCTGAAGTGAAGGGTTTGGATGTGGATGCTCTTTACATTTCTCACATCCAGGTTAATCAAGCACAGAGGCAAAGACGCCGCACATACCGTGCTCATGGAAGAATCAACCCCTACATGTCATCTCCTTGCCACATCGAGCTGACATTGTCCGAGAAGGAAGAGCCGGTGAAGAAAGAGCCTGAGACCCAGTTGGCCACAAACAAGAAAAAGTCTCGAGCACTTCGAAGTGGGGCTTCATCTTAA 618 0.479 MSFVKTLLFCLNLVPEEEAAAESMVKYSREPDNPTKSCKARGADLRVHFKNTRETAFSIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQRQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATNKKKSRALRSGASS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0224 205 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 24 205 - -
Lan14g0224 205 CDD Ribosomal_L22 38 174 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lan14g0224 205 PANTHER 60S RIBOSOMAL PROTEIN L17 24 205 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lan14g0224 205 SUPERFAMILY Ribosomal protein L22 24 177 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lan14g0224 205 MobiDBLite consensus disorder prediction 174 205 - -
Lan14g0224 205 Gene3D Ribosomal protein L22/L17 24 204 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lan14g0224 205 Hamap 50S ribosomal protein L22 [rplV]. 23 177 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lan14g0224 205 MobiDBLite consensus disorder prediction 174 193 - -
Lan14g0224 205 ProSitePatterns Ribosomal protein L22 signature. 150 174 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lan14g0224 205 Pfam Ribosomal protein L22p/L17e 40 174 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lan14g0224 205 TIGRFAM uL22_arch_euk: ribosomal protein uL22 27 177 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0224 Lan-Chr14 2552481 2554024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0224 24 205 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.813 8.06e-117 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0224 K02880 - jre:108982519 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0032 15 204167 206551 Lan14g0224 14 2552481 2554024 LSH
Lan14g0224 14 2552481 2554024 Lan3g1433 3 25917239 25919722 LSH
Lan14g0224 14 2552481 2554024 Lan1g1699 1 30638457 30640741 PCT
Lan1g1699 1 30638457 30640741 Lan14g0224 14 2552481 2554024 PCT